Re: [galaxy-dev] broken pipe when integrating VCF-merge from vcf-tools

2012-01-08 Thread James Boocock
Hi, We are attempting to integrate vcftools specifically vcf-merge into galaxy. We have two or files that we are attempting to merge, the command when run through terminal does not give a broken pipe, but when galaxy runs the command a broken pipe is given at the beginning and the start of the

Re: [galaxy-dev] multiple file input not taken into account in workflows

2012-01-08 Thread Christophe Antoniewski
Dannon, This is so great to get a meanful answer 12 min after my post. Thank you ! Chris Le lundi 9 janvier 2012, Dannon Baker a écrit : > Christophe, > > This is an issue that was resolved in changeset 6368:52de9815a7c4. The changeset hasn't made it into galaxy-dist yet, which I assume you'

Re: [galaxy-dev] multiple file input not taken into account in workflows

2012-01-08 Thread Dannon Baker
Christophe, This is an issue that was resolved in changeset 6368:52de9815a7c4. The changeset hasn't made it into galaxy-dist yet, which I assume you're using, but that should happen very soon. You could wait for the update, or if you'd like, you can pull the changes directly from galaxy-centr

[galaxy-dev] multiple file input not taken into account in workflows

2012-01-08 Thread Christophe Antoniewski
Hi We recently deployed a new galaxy instance for production, under Apache2 and postgresql. Although I am not familiar with postgresql, I followed the instructions in the wiki and it seems overall to work. However, there is at least an obvious issue with this new instance : when running a workflow