Hi All,
I installed a local Galay instance but found uploads to be incredible slow.
I have seen this can be remedied through Admin controls. However my
modifications to universe_wsgi.ini still do not enable me to log in as
Admin showing the following error message: No such user
I edited
On Oct 3, 2012, at 8:23 AM, Jackie Lighten wrote:
Hi All,
I installed a local Galay instance but found uploads to be incredible slow. I
have seen this can be remedied through Admin controls. However my
modifications to universe_wsgi.ini still do not enable me to log in as
Admin –
Hi Scott,
I see you've been working on this - it looks very comprehensive:
https://bitbucket.org/galaxy/galaxy-central/changeset/3d07a7800f9a
I can't test this just now, but if I run into any issues with the new
code later on, I'll be in touch.
Thanks,
Peter
On Fri, Sep 21, 2012 at 8:42 PM,
This script is used multiple times, so you might want to make sure that this
change won't cause files to become readable that you would prefer remain
unreadable.
From the log output, it looks like files are chmod'd to the user, then later
back to the Galaxy user. Is there somewhere else
On Oct 3, 2012, at 10:03 AM, Jackie Lighten wrote:
Thanks for your reply, Nate.
I guessed as much, and did attempt to log in via my registered account. I
get the same error. I am guessing this is because I am on
localhost:8080. Do I need to edit to universe_wsgi.ini file to tell my
local
On Oct 3, 2012, at 10:06 AM, David Hoover wrote:
This script is used multiple times, so you might want to make sure that this
change won't cause files to become readable that you would prefer remain
unreadable.
From the log output, it looks like files are chmod'd to the user, then later
While I've got you on the line, do you know why enabling the real user method
blanks out the jobName for the PBS job? The jobName is set if the jobs are
submitted as the Galaxy user.
David
On Oct 3, 2012, at 11:03 AM, Nate Coraor wrote:
On Oct 3, 2012, at 10:06 AM, David Hoover wrote:
On Oct 2, 2012, at 3:56 PM, David Hoover wrote:
When I use the real user method for running drmaa jobs as the real user, the
jobName value gets lost. It's kind of annoying, but not a show stopper. The
other values (outputPath, errorPath, remoteCommand, nativeSpecification,
etc.) are all
On Oct 2, 2012, at 11:44 PM, neil.burd...@csiro.au neil.burd...@csiro.au
wrote:
Hi,
I was under the impression that when a composite datatype (basic) file is
uploaded then the files contained within the composite file are also uploaded
is this not the case?
I was hoping my script
Hi guys,
We just discovered this issue on our new production galaxy. When trying to
open the workflow editor, the page just stuck in the loading bar. I opened
the JavaScript debug console of the web browser, I found;
GET http://pwbcglxprod:8081/galaxy/static/scripts/jquery.js?v=1348871183404
Hi All,
I installed a local Galay instance but found uploads to be incredible slow.
I have seen this can be remedied through Admin controls. However my
modifications to universe_wsgi.ini still do not enable me to log in as
Admin showing the following error message: No such user
I edited
David,
For instances that run jobs under real user ids I think the job_name variable
in drmaa.py does not need the username component in this case anymore as the
batch system takes care of that and the resulting job name looks cleaner in the
qstat output. I use
@@ -184,10 +183,12 @@
(with galaxy-central from a few days ago)
URL: http://galaxy/datasets/10385e16ab51958e/display/?preview=True
File
'/mnt/ngswork/galaxy/galaxy-dist/eggs/Paste-1.6-py2.6.egg/paste/exceptions/errormiddleware.py',
line 143 in __call__
app_iter = self.application(environ, start_response)
File
Hi Jeremy,
We found the cause, there are some corrupted file under
database/compiled_templates, we clean up that folder and allow Galaxy to
recompile everything.
Now it's working.
Cheers,
Derrick
On Wed, Oct 3, 2012 at 11:33 AM, Jeremy Goecks jeremy.goe...@emory.eduwrote:
We are using Sep 7
Thanks Nate.
Maybe you could explain how to use/implement composite datatypes so
I can understand fully how it works?
The mvb file created is just a list of files i.e.
The contents of Test.mvb could be:
a.txt
b.img
c.log
So, to get composite datatypes to work do I have to upload
15 matches
Mail list logo
