Please keep all replies on the list by using reply all!
You can write a wrapper around tophat2 and redirect the output to any
directory you want - as long as galaxy has write access to the
directory. However, the output will no longer be accessible as a history
item.
Regards, Hans
On
Howdy,
I am getting the following error with tophat:
Error in tophat:
[2012-12-27 15:08:40] Beginning TopHat run (v2.0.5)
---
[2012-12-27 15:08:40] Checking for Bowtie
Traceback (most recent call last):
File /usr/bin/tophat, line 4035, in module
I have searched the mailing list and found that the output, histories and
workflows are stored in ~/database/files. To do a little experiment I
deleted all the inside that directory. I then open my Galaxy and browse the
workflow. But the workflow is still there. I was wondering where is the
