i need to know more about the order of steps for RNA Seq data analysis
Is alignment and assembly should done first to combine all FASTQ reads into
one file and start analysis or i should do Quality Control ,filtering ,
trimming and manipulation first and do alignment and assembly at the end of
Just an update: when I set it to copy, it works fine as expected.
So I guess the only alternatives alternatives I have are:
- link the file, but as unzipped fastq
- copy the file (which copies the unzipped data to galaxy)
Would be nice to have a way of working with gzipped fastq files, since
Hello Elsayed,
Protocol help for RNA-seq analysis can be found here:
https://wiki.galaxyproject.org/Support#Tools_on_the_Main_server:_RNA-seq
The QA/QC steps should be done before mapping, on individual datasets
(such as replicates) or on partial or merged datasets as needed (if that
is how
Hello Prakash,
I am going to move this over to the galaxy-...@bx.psu.edu mailing
list where it will have greater visibility within our development
community.
Best,
Jen
Galaxy team
https://wiki.galaxyproject.org/MailingLists#The_lists
On 1/2/14 7:27
On Thu, Nov 21, 2013 at 10:10 PM, Dr. César Rodríguez Sánchez
cesar.rodriguezsanc...@ucr.ac.cr wrote:
Dear Nate,
I am trying to install galaxy on a different computer. This time it does not
run because of the following:
Traceback (most recent call last):
File ./scripts/paster.py, line 33,
Absolutely!
As long as I don’t need to open up the XML file in the toolshed tree…
Regards,
Thon
On Dec 31, 2013, at 11:53 AM, James Taylor
ja...@jamestaylor.orgmailto:ja...@jamestaylor.org wrote:
Would something as simple as showing the input parameter name in a tooltip
inside the
Hi, Everyone,
I ended up applying latest changeset (11247), and it appears that the style
diretory of Galaxy has changed a bit (it looks like the new Makefile under
the style directory implements grunt). So, I installed npm, and ran nmp
install, installed grunt-cli, and got everything to build
Hi,
We have a SSO environment provided by Oracle Fusion products and for some
reason, they don't like to send over HTTP_REMOTE_USER as a header variable to
downstream servers. I have seen it before with other web sites I have
integrated with Oracle Access Manager. Is there a way Galaxy can
