Hi Geert,
it is a converter, defined in datatypes_conf.xml, loacted in
/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml and with the
id CONVERTER_gff_to_fli_0.
Cheers,
Bjoern
Am 09.05.2014 07:59, schrieb Geert Vandeweyer:
Hi,
I would like to know what package/default tools is
Hi Nilaksha
I don't really understand your question, but a simple answer is:
Make a backup of the complete galaxy directory tree and make a backup of
your PostgreSQL database. You should do this anyway on a regularly
basis, if you use your Galaxy server in production. Since much more
likely,
Hi,
I am a student whos trying to implement a simple galaxy tool. I am trying to provide the user with the option of uploading a file. I have copied code from another tool:
upload_dataset name=files title=Specify Files for Dataset file_type_name=file_type metadata_ref=files_metadata
param
On Fri, May 9, 2014 at 12:46 PM, de...@gmx.de wrote:
Hi,
I am a student who's trying to implement a simple galaxy tool. I am trying
to provide the user with the option of uploading a file. I have copied code
from another tool ...
The upload tool is special (and separate). Normally the user
Howdy All, I have a set of tools in two parts; the first part builds some databases and prepares some data structures, the second tool plots a subset of the data in the data structure. Specifically, the data in the structures are named genomes. The second tools needs to know which genomes, and
Hi Eric,
the following should work, but is a real hack and not recommended, I think.
https://galaxy-dist.readthedocs.org/en/latest/_modules/galaxy/tools/parameters/dynamic_options.html
code file=filter_genome_from_file.py
param name = a
label = one input
format = data
Hi Björn,
Brilliant, thank you. That should be exactly what I need. Good to know all of
these dynamic options filters exist.
09.05.2014, 15:54, Björn Grüning bjoern.gruen...@gmail.com:
Hi Eric,
the following should work, but is a real hack and not recommended, I think.
Hello, Eric,
If the dynamic filters approach doesn't work out I can send you an approach
that worked for me. It involves creating a tool-generated html report that
contains a form which provides selection choices; and the form is set to submit
to a 2nd tool of your choice tool (it contains
Hi Damion,
Would you mind sharing your approach with us all?
Thanks!
Igor
On May 9, 2014 1:51 PM, Dooley, Damion damion.doo...@bccdc.ca wrote:
Hello, Eric,
If the dynamic filters approach doesn't work out I can send you an
approach that worked for me. It involves creating a tool-generated
Sure. I'll try to be concise; approach was sketched out about a month ago on
the board. I'll be uploading our generalized reporting tool which can be an
example of this once it has tests, but for now the bare bones:
Background: we wanted the ability to launch a Blast search of a number of
10 matches
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