Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-07-31 Thread Chaolin Zhang
the estimation entirely. -Dannon On Jul 31, 2011, at 11:11 AM, Chaolin Zhang wrote: Hi, I noticed that the current version of galaxy shows approximate number of lines for history items, when it is relatively big. I guess this is due to a consideration of performance, but it is quite

Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-07-31 Thread Chaolin Zhang
don't vary dramatically throughout the file. It would slow down the metadata setting, but for a personal galaxy instance you could certainly increase that number, or disable the estimation entirely. -Dannon On Jul 31, 2011, at 11:11 AM, Chaolin Zhang wrote: Hi, I noticed

Re: [galaxy-dev] exporting environment variables to SGE in galaxy

2011-07-30 Thread Chaolin Zhang
Hi Shantanu, Thanks for the information! This did the trick. Chaolin On Jul 30, 2011, at 1:28 AM, Shantanu Pavgi wrote: On Jul 29, 2011, at 11:28 PM, Chaolin Zhang wrote: Hi, I am setting up SGE in our galaxy mirror. One problem I have is that I cannot export environment variables

[galaxy-dev] exporting environment variables to SGE in galaxy

2011-07-29 Thread Chaolin Zhang
Hi, I am setting up SGE in our galaxy mirror. One problem I have is that I cannot export environment variables of the specific users running the galaxy service. On command line, I did this by qsub -V script.sh. or add a line #$ -V in script.sh I tried to change

[galaxy-dev] organizing histories in galaxy

2011-07-22 Thread Chaolin Zhang
Hi, Is there a way to organize related histories together into a project or folder? I realize in a lot of cases, a pipeline is designed for processing of a single sample, while a study typically consists of multiple samples that go through the same processing. They are then put together for

[galaxy-dev] how to purge histories/datasets not accessed/updated for a certain time

2011-04-04 Thread Chaolin Zhang
Hi, We have a local mirror of the galaxy system and the disk is occupied really quickly. Is there a way to purge histories/datasets not accessed/updated for a certain period of time, no matter if they are deleted by the user? It looks like the current scripts for clean up only purges