/outputs
help
.. class:: infomark
/help
/tool
Thanks,
-Curt
Curt Palm
Data Engineer
INGENUITY SYSTEMS | www.ingenuity.com
1700 Seaport Blvd., 3rd Floor | Redwood City, CA 94063
650.381.5084
AM, Curt Palm cp...@ingenuity.com wrote:
I've just created a repository in the sandbox and have been trying to
test the installation of a dependency my tool needs. The tool needs the
python module requests and I've written code. I get an error:
STDERR
python: can't open file 'setup.py': [Errno
When I try to run a GATK analysis that uses a bam file as input, I get the
following error in the html page:
Metadata missing, click the pencil icon in the history item and use the
auto-detect feature to correct this issue.
when the input file is a bam file that has not run yet or is still
I have been having trouble getting cufflinks to run with the -g or -G
parameters via Galaxy. when I select either use reference annotation or use
reference annotation as guide from the pulldown menu, cufflinks runs , but
the -g or -G is not added to the cufflinks command. I think I have
works fine.
I'm thinking there is a new line the input to build_chrom_db.py that is not
getting stripped by this script
thanks,
Curt Palm
***
Curtis J. Palm cp...@stanford.edu
Stanford Genome Technology Center
MC: 8307
