Hello,
Is it possible to share a history with a user (by user name) or change
ownership through the Galaxy API?
I didn't see any example doing this.
Thanks.
Cheers,
Daniel
--
Daniel Sobral,
Bioinformatics Unit
Instituto Gulbenkian de Ciência
-central.readthedocs.org/en/latest/lib/galaxy.webapps.galaxy.api.html#module-galaxy.webapps.galaxy.api.history_contents
Martin, Galaxy Team
On Wed, Jan 15, 2014 at 1:36 PM, Daniel Sobral
dsob...@igc.gulbenkian.pt mailto:dsob...@igc.gulbenkian.pt wrote:
Hello,
Is it possible
.
=
Daniel Sobral
Next Generation Sequencing Data Analyst
IGC - Instituto Gulbenkian de Ciencias
e-mail dsob...@igc.gulbenkian.pt
=
--
Daniel Sobral,
Bioinformatics Unit
Instituto Gulbenkian de Ciência
Hello,
At the moment I don't think there is a way to restrict usage of specific
tool(s) to specific user(s).
Is anyone thinking on developing this kind of functionality?
I guess it might be a bit complicated to implement?
I guess an easier alternative is to have different galaxy instances
Hello,
For certain tools, like bwa or blast, there is a non-configurable number
of threads to use inside the tool xml.
This is inconvenient for certain cluster configurations, where what we
want is division of a job into multiple jobs (I guess this is what is
intended by the parallel tag), and
Hello,
My instance of galaxy is running on an sshfs mount.
The problem comes when I set the new_file_path in the universe_wsgi.ini
to be a folder within that sshfs.
When I upload something, the hard link in the mkstemp_ln function fails
because of apparent limitations of sshfs with hard links. It
Hello,
I've installed a local toolshed server in http://myserver/toolshed/
(served by Apache)
I am able to run it and create a repository with a tool.
In my local galaxy server (http://myserver/galaxy/) I am able to see the
repositories in that toolshed server, but when I try to install the
paster log say when you get the 404 error trying to
install? You can see the paster log by running the following from your
Galaxy installation directory when your tool shed is running.
tail -f community_webapp.log
Greg Von Kuster
On Mar 16, 2012, at 4:34 AM, Daniel Sobral wrote:
Hello
to
my reply in case they have a simpler way of doing this or other advice.
Best,
Jen
Galaxy team
On 3/5/12 7:32 AM, Daniel Sobral wrote:
Hi,
I wanted to build a workflow where the first step would be a tool that
can have a variable number of inputs (e.g. a series).
It seems that I need
Hi,
We're trying to setup a galaxy server, but where we want some of the
tools to run on a cluster.
This cluster is supporting mosix so at the moment we cannot use any of
the drmaa stuff available (or can we?).
The way we're setting it up at the moment is to run the command we want
to run on the
the original
html structure?
One way of cheating is maybe zipping the output and provide the zip
file as data?
Thanks,
Daniel Sobral
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