) or a production instance (whole
institute or more) would be great
... or could anybody give their own 2 cents?
Gerald
From: Jeremy Goecks jeremy.goe...@emory.edu
To: Gerald Bothe g_bo...@yahoo.com
Cc: Nikos Sidiropoulos nikos.sid...@gmail.com; Peter Cock
Can I put in a similar question on top of this: How much resources do you need
for re-sequencing of a mammalian genome (assembly and variant detection), one
job at a time? E.g. how much RAM etc. if I want the re-sequencing SAM file of
a 30-fold coverage be done in 48 hours?
Gerald
Gerald
Here are a couple of questions on rsync:
1. the amount of files for hg19 and mm9 is extremely different (over 600 vs. 88
Gb) - why is that so? They are both mammalian genomes ... are there redundant
files in hg19, is mm9 incomplete...?
2. if I list the directories for hg19 and mm9, there seems
Trying out a local instance of Galaxy. Small files can be uploaded with
browse.. but this works only for files under 2Gb. Is there a folder in a
local copy of galaxy-dist where I can copy a large file and have it show up in
the Get Data/Upload File/Files uploaded via FTP window so that I can
Here are a couple of questions on rsync:
1. the amount of files for hg19 and mm9 is extremely different (over 600 vs. 88
Gb) - why is that so?
2. if I list the directories for hg19 and mm9, there seems to be a group of
files for bowtie2 in hg19, but not in mm9 - where are the ones for mm9?
3.
I installed a local instance of GALAXY following the instructions at Get
Galaxy ... in the Wiki. It installed ok, but when I tried the Bowtie2 mapper
with a test data set, I noticed that the reference genomes are missing. How can
I get the reference genomes (e.g. latest version of mouse and
