Re: [galaxy-dev] Acceleration Card Optimization

2014-02-18 Thread Nate Coraor
Hi Adam, This is going to depend entirely on the tools you're using. I'd suggest running your typical workload and examining the I/O patterns to determine what makes the most sense. I'd think the temp directory, input dataset, and output dataset filesystems to be the most utilized. --nate On

[galaxy-dev] Acceleration Card Optimization

2014-02-14 Thread Panzer, Adam
Hello All, I recently was gifted an ioFusion ioFX acceleration card to help speed my bioinformatics work along and I am wondering how best to integrate it into my instance to make Galaxy more efficient. Is it sufficient to merely ensure that the datasets being operated on are on the flash storage