Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-08-21 Thread Peter Cock
On Mon, Aug 19, 2013 at 3:34 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Filed on Trello, https://trello.com/c/HaQnZGvW/1060-embedding-help-text-in-workflows-ideally-rich-text-with-markup Peter On Fri, May 10, 2013 at 5:07 PM, Jeremy Goecks jeremy.goe...@emory.edu wrote: Do you think we

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-08-21 Thread Peter Cock
On Wed, Aug 21, 2013 at 5:40 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Mon, Aug 19, 2013 at 3:34 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Filed on Trello, https://trello.com/c/HaQnZGvW/1060-embedding-help-text-in-workflows-ideally-rich-text-with-markup Peter On Fri, May 10,

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-05-13 Thread James Taylor
On Fri, May 10, 2013 at 12:28 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Why HTML and not the same markup as the tool help? Either way, there are likely plugin editors that might be integrated... but for now I would be content to edit the *.ga file by hand if need be. I don't believe

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-05-10 Thread Dannon Baker
Hey Peter, You're correct, currently the only top level description field for a workflow is that Annotation/Notes field. While it wouldn't have rich text, is it reasonable to programmatically generate something like what you're suggesting from the combination of the primary Annotation/Notes

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-05-10 Thread Peter Cock
On Fri, May 10, 2013 at 3:10 PM, Dannon Baker dannon.ba...@gmail.com wrote: Hey Peter, You're correct, currently the only top level description field for a workflow is that Annotation/Notes field. While it wouldn't have rich text, is it reasonable to programmatically generate something like

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-05-10 Thread Jeremy Goecks
Do you think we could add a new 'rich text' field for a workflow free text help / readme file? Annotations will support HTML, and it's always been the long-term plan that they will include HTML. What's missing is a nice editor for creating HTML annotations. J.

Re: [galaxy-dev] Embedding a help text in a Workflow?

2013-05-10 Thread Peter Cock
On Fri, May 10, 2013 at 5:07 PM, Jeremy Goecks jeremy.goe...@emory.edu wrote: Do you think we could add a new 'rich text' field for a workflow free text help / readme file? Annotations will support HTML, and it's always been the long-term plan that they will include HTML. What's missing is a

[galaxy-dev] Embedding a help text in a Workflow?

2013-05-06 Thread Peter Cock
Hello all, I've recently started sharing some sample workflows on the Galaxy Tool Shed, http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow http://toolshed.g2.bx.psu.edu/view/peterjc/secreted_protein_workflow When writing a Galaxy tool we have a lot of flexibility within the help tag