Re: [galaxy-dev] Hidden output files

2012-04-18 Thread Dannon Baker
Hi Frank, This should be resolved as of changeset 7057:08fbfeaaf3e1. Thanks! -Dannon On Mar 27, 2012, at 4:37 AM, Frank Sørensen wrote: Hi Dannon, Unfortunately our server is (still) behind a firewall, so I can't share anything, but I hope you can reproduce the error from the following

Re: [galaxy-dev] Hidden output files

2012-04-18 Thread Frank Sørensen
Thanks. I have set up Mercurial to fetch updates from galaxy-dist, and it seems that my version of galaxy is up to date. - Should I pull from galaxy-central to get this update (7057:08fbfeaaf3e1)? - If so, could you please tell me how I do that? - Do you know how I permanently change

Re: [galaxy-dev] Hidden output files

2012-04-18 Thread Dannon Baker
On Apr 18, 2012, at 8:44 AM, Frank Sørensen wrote: - Should I pull from galaxy-central to get this update (7057:08fbfeaaf3e1)? - If so, could you please tell me how I do that? Sure, you can pull from galaxy-central by issuing a manual pull with source from your galaxy-dist directory: hg

Re: [galaxy-dev] Hidden output files

2012-03-27 Thread Frank Sørensen
Hi Dannon, Unfortunately our server is (still) behind a firewall, so I can't share anything, but I hope you can reproduce the error from the following description. If I make a vanilla test workflow say: Input Dataset - Map with BWA for Illumina (single end) - SAM-to-BAM - flagstat and

[galaxy-dev] Hidden output files

2012-03-23 Thread Frank Sørensen
Hi, I seem to have some problems with the visibility of tool outputs in my workflows. When I flag any given output as visible, Galaxy sometimes decides to hide it in the resulting history anyway. I can't find any systematic behavior though. It seems to be rather arbitrary weather Galaxy

Re: [galaxy-dev] Hidden output files

2012-03-23 Thread Dannon Baker
Could you share an offending workflow with me? Or is it any workflow? I've not seen this behavior before, but it definitely shouldn't be random. So in your situation the same workflow run multiple times will not consistently hide the same datasets? -Dannon On Mar 23, 2012, at 6:05 AM,