Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-24 Thread 王渭巍
customizing to the web interface of the tools. Is there any guidline for me? Thanks a lot. Ciao, Ben From: Björn Grüning Date: 2014-07-22 16:15 To: 王渭巍; Björn Grüning; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, if the job is in waiting in the queue it's

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-24 Thread Nate Coraor
for me? Thanks a lot. Ciao, Ben From: Björn Grüning Date: 2014-07-22 16:15 To: 王渭巍; Björn Grüning; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, if the job is in waiting in the queue it's unlikely (not impossible) that it is Galaxy fault. Can

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-22 Thread 王渭巍
will let me choose to use local server or a cluster. Ben From: Thomas Bellembois Date: 2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-22 Thread Björn Grüning
the question is , it seems not all the tools can be submitted via torque (or other resource manager), right? 王渭巍 From: Björn Grüning Date: 2014-07-21 01:23 To: 王渭巍; Björn Grüning; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, sorry but we do not run a Torque

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-20 Thread Björn Grüning
From: Thomas Bellembois Date: 2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread 王渭巍
Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster You can set up your instance to use your cluster by default for all

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Thomas Bellembois
no cluster options in megablast item. How can I see cluster options in the page, for example, the page will let me choose to use local server or a cluster. Ben From: Thomas Bellembois Date: 2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Ross
options in the page, for example, the page will let me choose to use local server or a cluster. Ben *From:* Thomas Bellembois thomas.bellemb...@ens-lyon.fr *Date:* 2014-07-15 17:41 *To:* galaxy-dev@lists.bx.psu.edu *Subject:* Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread Björn Grüning
From: Thomas Bellembois Date: 2014-07-15 17:41 To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-16 Thread 王渭巍
From: Björn Grüning Date: 2014-07-16 16:34 To: 王渭巍; Thomas Bellembois; galaxy-dev Subject: Re: [galaxy-dev] How to configure galaxy with a cluster Hi Ben, that is not possible at the moment. The idea is to keep the user-inferface as easy as possible for the user. You, as admin, can decide which

[galaxy-dev] How to configure galaxy with a cluster

2014-07-15 Thread 王渭巍
Hello, everyone, I am new here, and I am trying to configure galaxy with a cluster. I have 3 servers. One for galaxy server, two for cluster computing. And I followed Running Galaxy Tools on a Cluster done the configuration. Now I have 2 questions: 1. How to

Re: [galaxy-dev] How to configure galaxy with a cluster

2014-07-15 Thread Thomas Bellembois
Hello Ben, you can configure your Galaxy instance to use your cluster in the job_conf.xml file: https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster You can set up your instance to use your cluster by default for all jobs or only for specific jobs. Here is a part of my job_conf.xml