Hi Sebastian,
As for Galaxy Main (usegalaxy.org), our process is automated with Ansible,
the playbook for which can be found here:
https://github.com/galaxyproject/usegalaxy-playbook
A bit of documentation on what you should look for (new versions of
universe_wsgi.ini.sample,
Hi Nate,
Thank you very much for enlightening me - I tried to get an impression on
Ansible playbooks for the last two minutes and I am really exited about
it. Principle and syntax are close to what we are doing in plain BASH plus
config files, but the respective scripts are for sure more complex,
Hello,
I try to keep our Galaxy instance up to date.
Very often, some tools disappear and other do not work anymore. This
breaks some users workflows.
I may miss something. Is there a best update pratice to keep a Galaxy
instance and the tool-sheds fully functionnal ?
Regards,
Thomas
--
Hi Thomas,
We had this topic at the GCC this year, especially within the Galaxy
Admins BoF. The truth is (please correct me anyone if this is not the case
anymore!) that you are touching an unresolved point. Keeping track of
tools, settings etc. across the versions is not given. People have their
Hi Sebastian,
Thanks a lot for this detailed answer.
I will think about a custom recipe and try to contribute to this topic.
Thomas
--
Thomas Bellembois, Network and System Administrator, IGFL (France)
http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67
(IGFL internal IT doc:
Hello Thomas,
After public debate on Trello, there have been a couple tools that
have indeed disappeared completely but nearly all tools that have gone
away have been migrated to the tool shed and can be recovered with the
migration scripts that are included with each new release
Hello John,
I had forgotten that these migration scripts exist.
It should work better now. :)
Regards,
Thomas
--
Thomas Bellembois, Network and System Administrator, IGFL (France)
http://perso.ens-lyon.fr/thomas.bellembois - +33 4 26 73 13 67
(IGFL internal IT doc:
