Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-09-30 Thread Joachim Jacob | VIB |
Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/30/2013 02:15 PM, Greg Von Kuster wrote: Hello Joachim, What version of Galaxy / Tool Shed code are you using? [galaxy@galaxy galaxy-dist]$ hg tip changeset: 10411:c42567f43aa7 On Sep 30, 2013, at 8:05

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-09-30 Thread Joachim Jacob | VIB |
See attachment. Joachim Jacob Contact details: http://www.bits.vib.be/index.php/about/80-team On 09/30/2013 02:15 PM, Peter Cock wrote: On Mon, Sep 30, 2013 at 1:05 PM, Joachim Jacob | VIB | wrote: Hi Greg, Sorry to dig up this unsolved thread from a few months back. Recap of the bug: I h

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-09-30 Thread Greg Von Kuster
Hello Joachim, What version of Galaxy / Tool Shed code are you using? On Sep 30, 2013, at 8:05 AM, Joachim Jacob | VIB | wrote: > Hi Greg, > > > Sorry to dig up this unsolved thread from a few months back. > > Recap of the bug: I have developed a small tool. I have put it in my local > To

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-09-30 Thread Peter Cock
On Mon, Sep 30, 2013 at 1:05 PM, Joachim Jacob | VIB | wrote: > Hi Greg, > > > Sorry to dig up this unsolved thread from a few months back. > > Recap of the bug: I have developed a small tool. I have put it in my local > Toolshed, and installed it. After applying some changes to the tool, I 'hg >

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-09-30 Thread Joachim Jacob | VIB |
Hi Greg, Sorry to dig up this unsolved thread from a few months back. Recap of the bug: I have developed a small tool. I have put it in my local Toolshed, and installed it. After applying some changes to the tool, I 'hg push'ed the changes to my repository on my toolshed. I uninstalled the t

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-20 Thread Greg Von Kuster
lshed.g2.bx.psu.edu | deseq_and_sam2counts | nikhil-joshi | >>> 3348f484c49c | Installed | >>> 18 | toolshed.g2.bx.psu.edu | gmap | jjohnson | 93911bac43da | Installed | >>> 19 | toolshed.g2.bx.psu.edu | htseq_count | lparsons | f320093f1e8e | >>> Deactiva

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-19 Thread Greg Von Kuster
kirton | 38a28f5f9449 | > Installed | > 26 | localhost:9009 | hmmer | joachim | fc2339abcab7 | New | > 27 | localhost:9009 | hmmer | joachim | d724499758f9 | Uninstalled | > 28 | localhost:9009 | blat | joachim | e2b0a830c892 | Installed | > 29 | toolshed.g2.bx.psu.edu | prop_venn

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-18 Thread Joachim Jacob | VIB |
ocalhost:9009 | hmmer | joachim | d724499758f9 | Uninstalled | 28 | localhost:9009 | blat | joachim | e2b0a830c892 | Installed | 29 | toolshed.g2.bx.psu.edu | prop_venn | idot | cc6707a1e044 | Uninstalled | * Thanks, Joachim Jacob Van: "Greg Von Kuster" mailto

Re: [galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-14 Thread Greg Von Kuster
Hello Joachim, What version of Galaxy are your running? What does the tool shed paster go show for the 500 Internal Server Error? Also, run the following sql manually in your Galaxy database and send the results. select id, tool_shed, name, owner, installed_changeset_revision, status, err

[galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-14 Thread Joachim Jacob
Hi all, I have developed a tool in our local Galaxy, and imported it in a local toolshed. I next removed the 'dev' version of the tool in Galaxy, and installed it now via het Tool Shed Manager. I got an error that the dependencies could not be installed. If figured it out that it (needed to add a

[galaxy-dev] Messed up a tool installation from a local toolshed

2013-06-14 Thread Joachim Jacob | VIB |
Hi all, I have developed a tool in our local Galaxy, and imported it in a local toolshed. I next removed the 'dev' version of the tool in Galaxy, and installed it now via het Tool Shed Manager. I got an error that the dependencies could not be installed. If figured it out that it (needed to