Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-21 Thread Bjoern Gruening
Hi Greg, a first test seems to work as expected for me, will test again with the whole CTB. If I understood your commit you are searching now for the next valid 'installable' revision, aka a revision with metadata. Does it make sense to have revisions for Tool dependency definition. Only one

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-21 Thread Greg Von Kuster
Hello Bjoern, On Aug 21, 2013, at 2:51 AM, Bjoern Gruening bjoern.gruen...@gmail.com wrote: Hi Greg, a first test seems to work as expected for me, will test again with the whole CTB. Great - thanks! If I understood your commit you are searching now for the next valid 'installable'

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-21 Thread Bjoern Gruening
Hi Greg, seems to work fine! Hello Bjoern, On Aug 21, 2013, at 2:51 AM, Bjoern Gruening bjoern.gruen...@gmail.com wrote: Hi Greg, a first test seems to work as expected for me, will test again with the whole CTB. Great - thanks! If I understood your commit you are

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-21 Thread Greg Von Kuster
Hello Bjoern, On Aug 21, 2013, at 1:27 PM, Bjoern Gruening bjoern.gruen...@gmail.com wrote: Hi Greg, seems to work fine! Hello Bjoern, On Aug 21, 2013, at 2:51 AM, Bjoern Gruening bjoern.gruen...@gmail.com wrote: Hi Greg, a first test seems to work as expected for me, will

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-20 Thread Greg Von Kuster
Hello Bjoern, This issue should be resolved in change set 10412:29ab5a6d75a7, whcih is currently running on both tool sheds. No changes should be necessary to any of your current dependency definition files. This changeset was committed to the stable branch, so production Galaxy environments

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-19 Thread Greg Von Kuster
Hello Bjoern, I just wanted to let you know I've determined the cause of this issue and should have a fix for it committed by tomorrow (US Easter Time). I'll let you know as soon as the fix is committed. Greg Von Kuster On Aug 15, 2013, at 9:01 AM, Bjoern Gruening bjoern.gruen...@gmail.com

[galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-15 Thread Bjoern Gruening
Hi Dave, the bug is unfortunately still present in the latest Galaxy version. If you try to install http://toolshed.g2.bx.psu.edu/view/iuc/package_scipy_0_12 you will end up with an error, because numpy is not found. That error appears because scipy was uploaded and afterwards numpy was changed.

Re: [galaxy-dev] One installable revision is not working for orphan-tool-dependencies - Was: Action type 'template_command' on galaxy-dist?

2013-08-15 Thread Dave Bouvier
Peter, I've duplicated the installation error on the scipy tool dependency, and will be looking into the cause. Thanks for the report. --Dave B. On 8/15/13 09:01:17.000, Bjoern Gruening wrote: Hi Dave, the bug is unfortunately still present in the latest Galaxy version. If you try to