Ah this is exactly what I was looking for. Thanks!
On Wed, Apr 6, 2011 at 2:56 AM, Bram Slabbinck wrote:
> Hi andrew
>
> What you need to do is to add the qsub parameter '-sync y'. This puts a
> hold on the qsub command and makes it wait until the SGE job is finished.
>
> regards
> Bram
>
> On
Hi andrew
What you need to do is to add the qsub parameter '-sync y'. This puts a
hold on the qsub command and makes it wait until the SGE job is finished.
regards
Bram
On 05/04/2011 18:27, andrew stewart wrote:
I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
however wh
On Tue, Apr 5, 2011 at 12:27 PM, andrew stewart
wrote:
> I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
> however what I want to do is a little different.
Hi, Andrew. Take a look at this page:
https://bitbucket.org/galaxy/galaxy-central/wiki/Config/Cluster
In particular,
andrew stewart wrote:
> I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
> however what I want to do is a little different. Because I only want
> certain processes to be submitted to the queue, I'd rather control this at
> the tool configuration level (the xml wrapper). For e
Use qrsh instead of qsub to submit the job should help, I believe.
On Tue, Apr 5, 2011 at 10:27 AM, andrew stewart
wrote:
> I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
> however what I want to do is a little different. Because I only want
> certain processes to be submi
Ah, I should have added that this is for a strictly in-house Galaxy
implementation with absolutely no intention of publishing these specific
tools (just these ones! I promise I'll publish other tools in the future
:)
On Tue, Apr 5, 2011 at 12:38 PM, Peter Cock wrote:
> On Tue, Apr 5, 2011 at 5:
On Tue, Apr 5, 2011 at 5:27 PM, andrew stewart
wrote:
> I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
> however what I want to do is a little different. Because I only want
> certain processes to be submitted to the queue, I'd rather control this at
> the tool configuratio
I'm aware of how to configure Galaxy to use SGE in universe_wsgi.ini,
however what I want to do is a little different. Because I only want
certain processes to be submitted to the queue, I'd rather control this at
the tool configuration level (the xml wrapper). For example:
qsub myscript.sh
