Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-22 Thread Thon de Boer
' Subject: Re: [galaxy-dev] Submitting jobs as a real user without using chown, please OK...I think I can make this work, since it is not that difficult to make a directory world writeable...Or at least group writeable since all the users that will be able to run galaxy are in the same group as svcgalaxy

Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-21 Thread Nate Coraor
On Feb 20, 2013, at 2:37 PM, Anthonius deBoer wrote: Ah...Found what root squashing is and yes, that is turned on our isilon system... So out of luck I take it? We need to chown? we cannot fake the submission name in another way ;) Galaxy must have a way to make the job working directory

Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-21 Thread Thon de Boer
... Thanks Thon -Original Message- From: Nate Coraor [mailto:n...@bx.psu.edu] Sent: Thursday, February 21, 2013 5:56 AM To: Anthonius deBoer Cc: 'Galaxy-dev Galaxy-dev' Subject: Re: [galaxy-dev] Submitting jobs as a real user without using chown, please On Feb 20, 2013, at 2:37 PM, Anthonius

Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-20 Thread Nate Coraor
On Feb 19, 2013, at 11:02 PM, Thon de Boer wrote: Hi, I am trying to setup my galaxy system to allow jobs to be submitted as the real user, since people want to keep an eye on their job on the cluster sometimes and they have no ideas which ones are theirs… I tried the approach on the

Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-20 Thread Anthonius deBoer
I cannot run chown even as a sudo command...Same error...What is root squashing? I am reading on the internet that it is very common not to allow users to change the ownership of files...ThonOn Feb 20, 2013, at 05:52 AM, Nate Coraor n...@bx.psu.edu wrote:On Feb 19, 2013, at 11:02 PM, Thon de Boer

Re: [galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-20 Thread Anthonius deBoer
Ah...Found what root squashing is and yes, that is turned on our isilon system...So out of luck I take it? We need to chown? we cannot fake the submission name in another way ;)ThanksThonOn Feb 20, 2013, at 10:32 AM, Anthonius deBoer thondeb...@me.com wrote:I cannot run chown even as a sudo

[galaxy-dev] Submitting jobs as a real user without using chown, please

2013-02-19 Thread Thon de Boer
Hi, I am trying to setup my galaxy system to allow jobs to be submitted as the real user, since people want to keep an eye on their job on the cluster sometimes and they have no ideas which ones are theirs. I tried the approach on the wiki here: