Re: [galaxy-dev] Supporting file sets for running a tool with multiple input files

2013-11-06 Thread Lukasse, Pieter
Hi Dannon, Thanks for your reply. I've found a workaround by using the method Binary.register_sniffable_binary_format() . I discovered this workaround in a previous thread by John Chilton. Attached the complete solution, just for the record. Regards, Pieter. From: Dannon Baker

[galaxy-dev] Supporting file sets for running a tool with multiple input files

2013-11-04 Thread Lukasse, Pieter
Hi, Is there any news regarding support for the following scenario in Galaxy: - User has N files which he would like to process with a Galaxy tool using the same parameters - User uploads a (.tar or .zip ?) file to Galaxy and selects this as the input file for the tool - Tool

Re: [galaxy-dev] Supporting file sets for running a tool with multiple input files

2013-11-04 Thread Dannon Baker
Hi Pieter, We've worked out what we think is the right way to solve this for Galaxy and expect work to start soon. See the trello card ( https://trello.com/c/325AXIEr/613-tools-dataset-collections) for more details. For your particular tool, the first workaround that comes to mind would be