I modified the PYTHONPATH in htseq_count
(http://toolshed.g2.bx.psu.edu/view/lparsons/htseq_count) and cutadapt
(http://toolshed.g2.bx.psu.edu/view/lparsons/cutadapt). It would be
great to have some common dependencies setup in the toolshed such as
numpy, etc.
Lance
Björn Grüning wrote:
No it does not have root, and it is very important that we not install
anything at the system level since we need to maintain version
isolation. We should always be able to inject things into the
environment so that Python/Perl/R look in the right place.
--
James Taylor, Assistant Professor,
Hi Peter,
On Wed, Apr 17, 2013 at 6:05 PM, James Taylor ja...@jamestaylor.org wrote:
No it does not have root, and it is very important that we not install
anything at the system level since we need to maintain version
isolation. We should always be able to inject things into the
On Wed, Apr 17, 2013 at 9:24 PM, Björn Grüning wrote:
Hi Peter,
On Wed, Apr 17, 2013 at 6:05 PM, James Taylor ja...@jamestaylor.org wrote:
No it does not have root, and it is very important that we not install
anything at the system level since we need to maintain version
isolation. We
On Tue, Apr 16, 2013 at 5:23 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi all,
Galaxy has long had two very simple (but largely unused)
dependency mechanisms in a tool's XML (pre-dating the
tool shed), for binaries and Python modules, e.g.
requirements
requirement
Hi all,
Galaxy has long had two very simple (but largely unused)
dependency mechanisms in a tool's XML (pre-dating the
tool shed), for binaries and Python modules, e.g.
requirements
requirement type=python-modulenumpy/requirement
requirement type=binarytaxBuilder/requirement
