Re: [galaxy-dev] Unable to add R package dependency to tool_dependencies.xml

On Sat, Nov 1, 2014 at 2:30 AM, Ross wrote: > Hi, Bruno. > As Björn points out, cross-toolshed dependencies aren't currently supported > but exporting (eg) package_r_3_1_1 as a capsule (make sure to include ALL > dependencies) from one toolshed and importing that capsule into your own > local tool

Re: [galaxy-dev] Unable to add R package dependency to tool_dependencies.xml

Hi, Bruno. As Björn points out, cross-toolshed dependencies aren't currently supported but exporting (eg) package_r_3_1_1 as a capsule (make sure to include ALL dependencies) from one toolshed and importing that capsule into your own local toolshed brings all the sub-dependent packages so they exis

Re: [galaxy-dev] Unable to add R package dependency to tool_dependencies.xml

Hi Bruno, it is currently not possible to specify dependencies from other Tool Sheds. So you can only depend on packages that are in the same Tool Shed as your tool. Is this your main issue? Greg has some nice blog posts about the Tool Shed and how to set up a local test Tool Shed with other pac

[galaxy-dev] Unable to add R package dependency to tool_dependencies.xml

I'm attempting to create a tool dependency definition file for ExomeCNV, which notably depends on R (I'm trying to use the package_r_3_1_1 repository). However, I can't seem to set up the dependency properly. See attached for my tool_dependencies.xml. Also, see here for the erro