Re: [galaxy-dev] Visualise Galaxy workflows using graphviz

2013-01-21 Thread Jeremy Goecks
please find attached a small patch that add the gen_image() functionality to the export-workflow UI. Thanks for the contribution. I committed a modified version of it: https://bitbucket.org/galaxy/galaxy-central/commits/0e064a23864c846483b35f893cf0a769dedf24f1 Specifically, I (a) used

Re: [galaxy-dev] Visualise Galaxy workflows using graphviz

2013-01-20 Thread Björn Grüning
Hi, please find attached a small patch that add the gen_image() functionality to the export-workflow UI. I was not able to figure out how to add a patch to the trello card. But at least i created one ;). https://trello.com/c/PGz7JNzO Ciao, Bjoern Thanks for sharing Peter. FWIW, there is

[galaxy-dev] Visualise Galaxy workflows using graphviz

2012-05-23 Thread Peter van Heusden
Hi there Because my Galaxy workflows tend to sprawl outside the viewable space in my browser, I've written a script that, when given a workflow JSON file as input, writes out a graphviz dot format graph of the workflow. By default the graph treats datasets as nodes and analyses as edges (unlike

Re: [galaxy-dev] Visualise Galaxy workflows using graphviz

2012-05-23 Thread Jeremy Goecks
Thanks for sharing Peter. FWIW, there is already code in Galaxy to generate SVG from a workflow. See the gen_image function in web/controllers/workflow.py I think this code is used when workflows are included in the tool shed as well. If your code is better in some way(s), please consider a