Re: [galaxy-dev] automatically adding fasta files to built-in databases and selecting files questions

2014-04-22 Thread Hans-Rudolf Hotz
Hi Nik Have a look at the Profile Annotations tool (~/tools/annotation_profiler/annotation_profiler.xml) and the file ~/tool-data/annotation_profiler_options.xml Regards, Hans-Rudolf On 04/19/2014 12:48 AM, Nikhil Joshi wrote: Hi Hans, Thanks for your response. I am trying to get just

Re: [galaxy-dev] automatically adding fasta files to built-in databases and selecting files questions

2014-04-09 Thread Hans-Rudolf Hotz
Hi Nik I don't think there is a solution out of the box for all of this, but I will try to give you some pointers - others might have different or even better suggestions (my suggestion are very 'hacky'). Let me answer your questions in reverse order: - Instead of using Add another file,

[galaxy-dev] automatically adding fasta files to built-in databases and selecting files questions

2014-04-08 Thread Nikhil Joshi
Hi all, We have a local install of Galaxy that we use for testing for our bioinformatics courses. I am creating some new tool interfaces for the install. I want to create a tool that will allow a user to automatically add a fasta database to the built-in databases (without needing to reboot the