Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carl Eberhard
Hello, Dan. I'm glad you updated. I noticed another error in your log: 127.0.0.1 - - [04/Feb/2013:09:50:43 -0700] POST /tool_runner/upload_async_create HTTP/1.1 500 - http://localhost:8080/; Mozilla/5.0 (Macintosh; Intel Mac OS X 10_8_2) AppleWebKit/537.17 (KHTML, like Gecko) Chrome/24.0.1312.57

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carlos Borroto
On Mon, Feb 4, 2013 at 1:55 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: Re: login: I believe there's a redirect in place that moves you past the older 'Return to the homepage' message automatically - I think you're good there (and logged in). Are you seeing the 'Logged in as your email' in the

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Dan Tenenbaum
On Mon, Feb 4, 2013 at 11:45 AM, Carlos Borroto carlos.borr...@gmail.com wrote: On Mon, Feb 4, 2013 at 1:55 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: Re: login: I believe there's a redirect in place that moves you past the older 'Return to the homepage' message automatically - I think you're

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carl Eberhard
Just to be clear, Dan - this solved the login issue and not the upload issue (in which case I'd owe Carlos a six-pack), correct? C On Mon, Feb 4, 2013 at 4:04 PM, Carl Eberhard carlfeberh...@gmail.comwrote: Thanks much, Carlos - I owe you a beer! On Mon, Feb 4, 2013 at 4:01 PM, Dan

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carlos Borroto
On Mon, Feb 4, 2013 at 4:46 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Mon, Feb 4, 2013 at 1:21 PM, Carl Eberhard carlfeberh...@gmail.com wrote: Just to be clear, Dan - this solved the login issue and not the upload issue (in which case I'd owe Carlos a six-pack), correct? Sorry...this

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carl Eberhard
Even better - thanks again, Carlos - and thanks for the help in tracking this down, Dan. On Mon, Feb 4, 2013 at 4:46 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Mon, Feb 4, 2013 at 1:21 PM, Carl Eberhard carlfeberh...@gmail.com wrote: Just to be clear, Dan - this solved the login issue

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-02-04 Thread Carl Eberhard
Thanks much, Carlos - I owe you a beer! On Mon, Feb 4, 2013 at 4:01 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Mon, Feb 4, 2013 at 11:45 AM, Carlos Borroto carlos.borr...@gmail.com wrote: On Mon, Feb 4, 2013 at 1:55 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: Re: login: I believe

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-30 Thread Dan Tenenbaum
On Wed, Jan 30, 2013 at 10:36 AM, Carl Eberhard carlfeberh...@gmail.com wrote: Dan, Are you cloning from galaxy-central or galaxy-dist? Are you cloning from the tip or a specific revision? I installed galaxy as recommended in the docs: hg clone https://bitbucket.org/galaxy/galaxy-dist/

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-30 Thread Dan Tenenbaum
On Wed, Jan 30, 2013 at 11:36 AM, Carl Eberhard carlfeberh...@gmail.com wrote: Well - as long as those errors don't happen again - it may well be progress. For the next step, can you: 1. open Galaxy in Chrome 2. Go to the settings menu (the button with three horizontal bars on the right side

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-28 Thread Carl Eberhard
I was incorrect in stating that the changes in the next galaxy-dist will help in this case, unfortunately. From the stack trace you posted, there is a deeper error with your instance that the client-side changes won't help. Can you post the size, type, and name of the file you're trying to

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-28 Thread Dan Tenenbaum
On Mon, Jan 28, 2013 at 1:40 PM, Carl Eberhard carlfeberh...@gmail.com wrote: I was incorrect in stating that the changes in the next galaxy-dist will help in this case, unfortunately. From the stack trace you posted, there is a deeper error with your instance that the client-side changes won't

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-28 Thread Carl Eberhard
If you go to your galaxy root in a terminal and then cd to eggs, what is the version listed for SQLAlchemy? Do you have SQLAlchemy installed already on that machine (apart from the one in Galaxy's eggs)? On Mon, Jan 28, 2013 at 4:50 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Mon, Jan 28,

Re: [galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-28 Thread Dan Tenenbaum
On Mon, Jan 28, 2013 at 1:59 PM, Carl Eberhard carlfeberh...@gmail.com wrote: If you go to your galaxy root in a terminal and then cd to eggs, what is the version listed for SQLAlchemy? SQLAlchemy-0.5.6_dev_r6498-py2.7.egg Do you have SQLAlchemy installed already on that machine (apart from

[galaxy-dev] error uploading file with fresh installation: this request returned None from get_history()

2013-01-23 Thread Dan Tenenbaum
Hi, I installed galaxy completely from scratch: rm -rf galaxy-dist hg clone https://bitbucket.org/galaxy/galaxy-dist/ I'm not a mercurial expert but I think I have changeset 8530:a4113cc1cb5e; at least that's the first entry in hg log. Then started galaxy like this: cd galaxy-dist ./run.sh