You'll need to (a) add an output file to your tool configuration ( see
http://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax#A.3Coutputs.3E_tag_set
) and (b) write your output to the file. See other tool wrappers (e.g.
/tools/filters/cutWrapper.xml) for an example.
Good luck,
J.
On Jun
Hi,
I am trying to integrate a tool that is written in java into galaxy.
The following is what I've done.
1) Created a directory inside /tools directory and put my xml and runnable
jar file in it.
2) Linked the xml file in 'tool_conf.xml'.
*tool_conf.xml*
section name=sample
sample.xml
tool id=sample name=Compute correlation
commandjava -jar sample.jar/command
/tool
Your tool config does not define any output elements, so no dataset is
created. You need to define at least one output, and then use it's
name in the command line.
Hi,
I am trying to integrate a tool that is written in java into galaxy. The
following is what I've done.
1) Created a directory inside /tools directory and put my xml and runnable
jar file in it.
2) Linked the xml file in 'tool_conf.xml'.
*tool_conf.xml*
section name=sample tool
