Re: [galaxy-dev] stdout in history

2014-06-02 Thread Daniel Blankenberg
Hi All, I think it makes a lot of sense to allow disabling the addition of stderr and/or stdout to dataset.info on a per tool/output dataset basis. I’ve added a Trello card for this here: https://trello.com/c/hC5HABnr. Not sure when anyone might have a chance to look into it, but pull requests

Re: [galaxy-dev] stdout in history

2014-05-31 Thread Wolfgang Maier
if possible please? Thanks Neil Message: 3 Date: Fri, 30 May 2014 15:04:47 +0200 From: Wolfgang Maier wolfgang.ma...@biologie.uni-freiburg.de To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] stdout in history Message-ID: lm9vle$70e$2...@ger.gmane.org Content-Type: text/plain; charset=UTF-8; format

Re: [galaxy-dev] stdout in history

2014-05-31 Thread Jorrit Boekel
Hi Neil, I had some problems with this before too, so I created an tool config option a long time ago in my own galaxy fork. Never really bothered with submitting it, but it lives in these commits: https://bitbucket.org/glormph/adapt/commits/4ba256a9b8782642429ecb5472a456584bed86d5

[galaxy-dev] stdout in history

2014-05-30 Thread Neil.Burdett
Hi, It seems that the first 4/5 lines that are printed in the source code tools appear in the history (when expended) and in stdout link. Is there anyway to stop print statements appearing in the history panel? Thanks Neil ___ Please

Re: [galaxy-dev] stdout in history

2014-05-30 Thread Wolfgang Maier
you could just redirect stdout to /dev/null in the tool's xml command line ? Is that an option for you ? Cheers, Wolfgang On 30.05.2014 14:35, neil.burd...@csiro.au wrote: Hi, It seems that the first 4/5 lines that are printed in the source code tools appear in the history (when

[galaxy-dev] stdout in history

2014-05-30 Thread Neil.Burdett
Yes that would work. Can you supply an example if possible please? Thanks Neil Message: 3 Date: Fri, 30 May 2014 15:04:47 +0200 From: Wolfgang Maier wolfgang.ma...@biologie.uni-freiburg.de To: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] stdout in history Message-ID: lm9vle$70e$2