Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-22 Thread Greg Von Kuster
@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Same file structure, but updated files and added the executable and tool_config.xml.sample for users who install manually. Here's the tar ball. Birgit Crain, Ph.D. | Sr. Professional Services Scientist | Complete Genomics, Inc

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-20 Thread Birgit Crain
@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hi Birgit, Did you upload the same tarball you sent me previously, or was it a different tarball. If different, can you send it to me? Thanks On Jun 18

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-20 Thread Greg Von Kuster
Kuster g...@bx.psu.edu Cc: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Same file structure, but updated files and added the executable and tool_config.xml.sample for users who install manually. Here's the tar ball. Birgit

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-18 Thread Greg Von Kuster
, June 14, 2012 11:44 AM To: Birgit Crain bcr...@completegenomics.com Cc: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hello Birgit, This issue has been resolved in changeset 7272:b761471d7590, which is currently available

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-14 Thread Birgit Crain
@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hi Birgit, What version of Galaxy are you running? You can determine this by typing hg heads in your Galaxy installation directory. Also, what version of Python are you running, and what database

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-14 Thread Greg Von Kuster
, 2012 6:09 AM To: Birgit Crain bcr...@completegenomics.com Cc: galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hello Birgit, Your archive included several ._ scripts for some reason. None of these were valid xml files

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-13 Thread Birgit Crain
: galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edumailto:galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hello Birgit, Your archive included several ._ scripts for some reason. None of these were valid xml files

[galaxy-dev] tool_data_table_config.xml.sample

2012-06-12 Thread Birgit Crain
Hi I'm developing tools that use an entry in the tool_data_table_config.xml file. For upload into a repository I created a tool_data_table_config.xml.sample file with the corresponding table entry. The structure for the file I copied from the tool_data_table_config.xml. in the galaxy

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-12 Thread Greg Von Kuster
Hi Birgit, I don't see any problem with your xml definition below. Are you sure the problem is not with another file in the tarball? If you can send me the tarball, I'll take a look. Greg Von Kuster On Jun 12, 2012, at 4:09 PM, Birgit Crain wrote: Hi I'm developing tools that use an

Re: [galaxy-dev] tool_data_table_config.xml.sample

2012-06-12 Thread Birgit Crain
@lists.bx.psu.edu Subject: Re: [galaxy-dev] tool_data_table_config.xml.sample Hi Birgit, I don't see any problem with your xml definition below. Are you sure the problem is not with another file in the tarball? If you can send me the tarball, I'll take a look. Greg Von Kuster On Jun 12, 2012, at 4:09