Hi,
I have modified the tool dependency xml file by adding Absolute path to
output file, like below, then my test cases are *passing*:
tests
test
param name=input1 value=TCGA-02-0001-01/
param name=input2 value=Project-TSS-Participant/
output name=output file=path to test-data
Hi,
I found below resources:
- Running
testhttps://wiki.galaxyproject.org/Admin/RunningTests?action=showredirect=Admin%2FRunning+Tests
- Writing Functional
testshttps://wiki.galaxyproject.org/Admin/Tools/Writing%20Tests
Thanks,
JanakiRam
On Thu, Mar 27, 2014 at 2:53 PM, Janaki Rama
Hi,
I have added tests to tool dependency xml, but how should I run these
tests, can you please help me to run test cases.
.
tests
test
param name=input1 value=some string/
param name=input2 value=expected format/
output name=output
As Janaki replied below, see:
http://wiki.galaxyproject.org/Admin/RunningTests?action=showredirect=Admin%2FRunning+Tests
On Mar 27, 2014, at 7:15 AM, Janaki Rama Rao Gollapudi
janakiram.gollap...@india.semanticbits.com wrote:
Hi,
I have added tests to tool dependency xml, but how should I
Hi,
Thanks for reply. I composed a details email for better clarity.
when run grep command in galaxy home folder ( ./run_functional_tests.sh
-list | grep barcode-parse), I got no results.
What I did was:
- Implemented a custom tool (It has one python script and tool
definition file. These
Hello Janaki,
Thanks for clarifying that you have installed your tools from a Tool Shed. In
this case, functional tests do not use Galaxy's tool_conf.xml.sample, so
changing it will make no difference. For information about running functional
tests on tools installed from the Tool Shed, see:
Thank you, I will go through the resources and will reply my results to
this email chain.
Thanks,
JanakiRam
On Thu, Mar 27, 2014 at 6:39 PM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Janaki,
Thanks for clarifying that you have installed your tools from a Tool Shed.
In this case,
