On Mon, Sep 23, 2013 at 3:41 PM, John Chilton chil...@msi.umn.edu wrote:
So you want this:
action type=setup_virtualenvdocopt==0.6.1
python-levenshtein==0.10.2
biopython==1.62
ngs-tools==0.1.6
/action
Newline between dependencies, and no whitespace to the left of each package.
Hi John,
I
On Mon, Sep 23, 2013 at 1:57 PM, John Chilton chil...@msi.umn.edu wrote:
On Mon, Sep 23, 2013 at 12:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Carlos!
Hi,
I have created a tool that depends on biopython. I don't like the idea
of having several copies of
On Mon, Sep 23, 2013 at 1:09 PM, Carlos Borroto
carlos.borr...@gmail.com wrote:
On Mon, Sep 23, 2013 at 1:57 PM, John Chilton chil...@msi.umn.edu wrote:
On Mon, Sep 23, 2013 at 12:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Carlos!
Hi,
I have created a tool
On Mon, Sep 23, 2013 at 1:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
I'm installing my package using the virtualenv option. As you can see
below I marked biopython as prior_installation_required=True.
However, I can see that virtualenv is installing a copy of
On Mon, Sep 23, 2013 at 1:25 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Am Montag, den 23.09.2013, 12:57 -0500 schrieb John Chilton:
On Mon, Sep 23, 2013 at 12:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Carlos!
Hi,
I have created a
On Mon, Sep 23, 2013 at 2:30 PM, Carlos Borroto
carlos.borr...@gmail.com wrote:
On Mon, Sep 23, 2013 at 2:22 PM, John Chilton chil...@msi.umn.edu wrote:
Hi John,
First let me tell you why I think duplicating the biopython install
reduces reproducibility. I have this on my tool setup.py:
Opps, sent that last mail out before I meant to.
On Mon, Sep 23, 2013 at 2:30 PM, Carlos Borroto
carlos.borr...@gmail.com wrote:
On Mon, Sep 23, 2013 at 2:22 PM, John Chilton chil...@msi.umn.edu wrote:
Hi John,
First let me tell you why I think duplicating the biopython install
reduces
On Mon, Sep 23, 2013 at 2:24 PM, Carlos Borroto
carlos.borr...@gmail.com wrote:
Can you try to insert that (maybe adopt, its not checked):
action type=set_environment_for_install
repository name=package_biopython_1_62 owner=biopython
package name=biopython version=1.62 /
Hi Carlos!
Hi,
I have created a tool that depends on biopython. I don't like the idea
of having several copies of biopython around and also for best
practice making workflows using my tool reproducible, I chose to make
my package repository[1] dependent of package_biopython_1_62.
Am Montag, den 23.09.2013, 12:57 -0500 schrieb John Chilton:
On Mon, Sep 23, 2013 at 12:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Carlos!
Hi,
I have created a tool that depends on biopython. I don't like the idea
of having several copies of biopython
On Mon, Sep 23, 2013 at 12:51 PM, Björn Grüning
bjoern.gruen...@pharmazie.uni-freiburg.de wrote:
Hi Carlos!
Hi,
I have created a tool that depends on biopython. I don't like the idea
of having several copies of biopython around and also for best
practice making workflows using my tool
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