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On Apr 8, 2011, at 11:01 AM, Dave Walton wrote:
This is very close to our config, except -
We run all of this on a 4 core Virtual Machine running SUSE Linux Enterprise
Server 11 (x86_64) with 16 GB of memory.
Instead of SGE our HPC cluster uses Torque/Moab for scheduling.
Also, we've
Assaf,
Assuming cuffcompare generates a TMAP and REFMAP file for each input
file, does this mean the wrapper tool retrieves only the first and
second input files' TMAP and REFMAP files ?
Yes, this is the way it works currently. This is clearly problematic,
but it meets most users' needs
Thanks for the quick answer,
Jeremy Goecks wrote, On 04/11/2011 12:50 PM:
Assuming cuffcompare generates a TMAP and REFMAP file for each
input file, does this mean the wrapper tool retrieves only the
first and second input files' TMAP and REFMAP files ?
Yes, this is the way it works
On Mon, Apr 11, 2011 at 7:26 PM, Ryan Golhar golha...@umdnj.edu wrote:
I just updated my local galaxy instance using hg pull, and the history items
are no longer expandable. What happened?
Which browser(s) are affected? I recall reporting some issues
with Internet Explorer only and the history
This is Safari on Mac OS X. I just reverted to my backup and the
problem still exists so I don't know what is going on now.
On 4/11/11 2:35 PM, Peter Cock wrote:
On Mon, Apr 11, 2011 at 7:26 PM, Ryan Golhargolha...@umdnj.edu wrote:
I just updated my local galaxy instance using hg pull, and
Couple of voodoo things to try:
1. Manually clean the cache of your web browser
2. Restart your apache/nginx
Depending on your last update revision, it's possible that some of your
javascripts were updated by the latest pull, but your webbrowser maintains a
cached older version.
Those are the
Hi Ryan,
I still think it's a javascript problem (most of the fancy DHTML tricks in
galaxy, like expanding/collapsing datasets, are done in javascript - so when
something like that doesn't work, it's a good place to start).
First indication:
If you go to your galaxy server with Firefox and
Yeah, I pulled down a new version of galaxy-dist to a new directory and
am comparing the differences using diff on my current instance. For
some reason hg pull -u didn't work. It aborted because I installed a
bam.xml for igv in display_applications/igv. Apparently one was added
to
I screwed Galaxy. I will delete / reinstall it. At least I will delete
it. I think I will revert back to the shell for awhile to get some work
done. I've spent *way* too much time trying to get galaxy to work
properly. Thanks for all the help everyone.
On 4/11/11 4:32 PM, Ryan Golhar
Hi Liisa,
What does hg tip return?
K
On Mon, Apr 11, 2011 at 10:55 AM, Liisa Koski
liisa.ko...@dnalandmarks.ca wrote:
Hi I just tried to update my local installation of Galaxy but accidentally
hit Ctr-C when it asked me a question
added 285 changesets with 649 changes to 354 files
local
James Taylor wrote, On 04/11/2011 09:05 PM:
Assaf, it should be the last modification to the dataset's metadata, info,
etc. Any change that would be made through the edit attributes page.
I agree this is confusing and should probably not be shown to the user at all.
On Apr 11, 2011, at
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