Hi Greg,
thanks for the suggestion. This line doesn't seem to work:
options from_file=some_value
Galaxy looks for a file at galaxy_dir/tool-data/some_value rather than
the value given in the .loc file
I would also like to be able to use the galaxy data tables rather then
referring
Server ErrorAn error occurred. See the error logs for more information.
(Turn debug on to display exception reports here)
My guess is that this will be a problem with your tool configuration file in
XML format.
-- Vipin
___
Please keep
Each use of fabric's `run` method is independent so they cannot be chained;
you would either need to prepend the export command to the command that
depends on the fact PYTHONPATH is set (e.g., run(export PYTHONPATH=...;
command that requires given PP) or (better approach) create an env.sh
file in
Hello Ed,
Looking at the logs, I see that you uploaded to your Roche454 tool suite repo.
Is that correct? I don't see any exceptions in the logs, so not sure what
happened. Are you still having this issue?
Thanks,
Greg Von Kuster
On Jul 14, 2011, at 9:32 PM, Edward Kirton wrote:
Server
Good afternoon
I am having some trouble updating our local galaxy, in summary it seems to
fail. I have included the errors below and would really appreciate any
assistance that could be offered.
galaxy@jic55119:~/software/galaxy-ceneral$ sh manage_db.sh upgrade
57 - 58...
Migration script to
I just found out the former approach you mentioned. Its now installing
perfectly. The latter approach won't work for a Qiime installation
because its needs PyCogent on its path during the setup.py phase.
Thanks for clarification.
If I finished adding Qiime' dependencies I will put it on
Gus,
Good to hear about your progress. Please send me a patch of your changes and
I'll take a look. You can create a patch using Mercurial from the command line
as follows.
% hg diff tophat.patch
Thanks,
J.
On Jul 13, 2011, at 7:37 PM, W. Augustine Dunn III wrote:
First off thank you
Hello,
We have recently put a local installation of Galaxy on our network and
connected it to a MYSQL database. In order to have more space available for
uploaded and created files, we also changed the values of file_path and
new_file_path in the config file. The file_path field was changed
