[galaxy-dev] Fwd: History page not opening

2013-05-15 Thread sridhar srinivasan
Hi, In backend i am getting this message 192.168.1.5 - - [15/May/2013:09:32:12 +0600] GET / HTTP/1.1 200 - http://192.168.1.5- -/ Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.18) Gecko/20110616 Red Hat/3.6-1.el5_6 Firefox/3.6.18 Thanks Sridhar On 5/14/13, sridhar srinivasan

[galaxy-dev] User expiration date

2013-05-15 Thread Nikos Sidiropoulos
Hi Is it possible to set an expiration date for specific user accounts? Bests, Nikos ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use

Re: [galaxy-dev] Handling of tool_dependencies.xml errors in Tool Shed testing

2013-05-15 Thread Peter Cock
On Mon, May 13, 2013 at 8:35 PM, Peter Cock p.j.a.c...@googlemail.com wrote: On Mon, May 13, 2013 at 11:42 AM, Peter Cock p.j.a.c...@googlemail.com wrote: ... This would explain the behaviour I am seeing with effectivet3 and other tools on the Tool Shed - despite the tool_dependencies.xml

[galaxy-dev] starting run_reports.sh fails

2013-05-15 Thread Joachim Jacob | VIB |
run_reports.sh dies silently. Its last will in reports_webapp.log states: Traceback (most recent call last): File ./scripts/paster.py, line 33, in module serve.run() File /home/galaxy/galaxy-dist/lib/galaxy/util/pastescript/serve.py, line 1056, in run invoke(command, command_name,

Re: [galaxy-dev] Handling of tool_dependencies.xml errors in Tool Shed testing

2013-05-15 Thread Greg Von Kuster
Hi Peter, I'm going to be enhancing this new feature further today, creating a new list Latest revision: installation errors, so this category will be extracted from the current failing tests category. At the same time I'll be adding the new feature allowing the owner of a repository to set

Re: [galaxy-dev] tool_dependencies inside tool_dependencies

2013-05-15 Thread John Chilton
Hey Nate, On Tue, May 14, 2013 at 8:40 AM, Nate Coraor n...@bx.psu.edu wrote: Hi John, A few of us in the lab here at Penn State actually discussed automatic creation of virtualenvs for dependency installations a couple weeks ago. This was in the context of Bjoern's request for supporting

[galaxy-dev] Problem changing username

2013-05-15 Thread Thomas Haverkamp
Hi, I have been trying to change my username in Galaxy, since the e-mail address I was using is going to be discontinued. But somehow, if I try to change it I get an error, and the change can not be done. The error code that was generate is the following: GURU MEDITATION:

Re: [galaxy-dev] report error

2013-05-15 Thread Daniel Blankenberg
Hi Monica, I've pushed a fix to our stable branch that should resolve this issue for you. It will be available on our main server the next time it is updated. For now, you should be able to work around the error by going into your stored workflows and remove any non-ASCII characters from the

[galaxy-dev] Imported datasets are marked as deleted

2013-05-15 Thread pavan videm
Hi all, We have the following problem with importing datasets from data libraries. The datasets from data libraries can be imported in to the history but as soon as they imported they are marked as deleted. So I can see them only when 'Include Deleted Datasets' from history menu is ticked. There

Re: [galaxy-dev] starting run_reports.sh fails

2013-05-15 Thread Joachim Jacob | VIB |
Already reported in Trello https://trello.com/c/o0S3klAF Thanks for the fix! Joachim Jacob Rijvisschestraat 120, 9052 Zwijnaarde Tel: +32 9 244.66.34 Bioinformatics Training and Services (BITS) http://www.bits.vib.be @bitsatvib On 05/15/2013 03:19 PM, Joachim Jacob | VIB | wrote:

[galaxy-dev] Toolshed broken link

2013-05-15 Thread Björn Grüning
Hi, if you are on the manage tool dependencies page the link to get repository updates is broken: ValueError: invalid literal for int() with base 10: 'b33e1f78e90a230d' Cheers, Björn ___ Please keep all replies on the list by using reply

[galaxy-dev] Web Page Problem

2013-05-15 Thread sridhar srinivasan
Dear Developers, After installing galaxy, the history part of the webpage is not opening and it shows Content Encoding Error The page you are trying to view cannot be shown because it uses an invalid or unsupported form of compression. * Please contact the website owners to inform them