Hi Alex,
There will be an update to the GATK tools in Galaxy in the coming weeks, for
compatibility with version 1.2 of the GATK. There have been several changes
that are not directly backwards compatible, including much of the ROD handling
(which now will only accept vcf files for the most pa
Great, thanks!!!
From: Daniel Blankenberg [mailto:d...@bx.psu.edu]
Sent: Tuesday, October 18, 2011 10:24 AM
To: Chorny, Ilya
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Trouble getting setting dbkey of output data
Hi Ilya,
The 'actions' tagset must be within the ''data' tagset, you
Hi Ilya,
The 'actions' tagset must be within the ''data' tagset, you have it outside.
Try something like:
Please let us know if we can provide additional assistance.
Thanks for using Galaxy,
Dan
O
Anybody, anybody?
Thanks,
Ilya
From: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
Sent: Monday, October 17, 2011 9:31 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] Trouble getting setting dbkey of output data
I am having
Hi Manuel,
Thanks! I've already taken the easy route and switched to nginx, but if I
need to switch back to Apache I'll build from source as you've described
below.
Best,
-Kip
On Mon, Oct 17, 2011 at 1:14 PM, Manuel Kohler
wrote:
> Hi Kip,
> I had exactly the same problem you had, but I finall
Jim,
Sounds great - this will be very helpful!
Greg
On Oct 18, 2011, at 11:03 AM, Jim Johnson wrote:
> Greg,
>
> The mothur_toolsuite in the ToolShed contains a file with added datatypes
> for metagenomics (used by mothur and some by qiime):
> mothur_toolsuite/mothur/lib/galaxy/datatypes/met
Greg,
The mothur_toolsuite in the ToolShed contains a file with added datatypes for
metagenomics (used by mothur and some by qiime):
mothur_toolsuite/mothur/lib/galaxy/datatypes/metagenomics.py
The README has info on how I incorporated mothur into our local galaxy server.
I'm also working on G
Hello Alessandro,
I misunderstood the issue you were raising in your initial email, but now
understand based on the information you've supplied below.
When you use the "Upload a directory of files" option to upload files to a data
library, all of the files in the directory are uploaded (there
