Has anyone created a tool for running RepeatMasker http://www.repeatmasker.org/
within Galaxy?
It's something we'd like to do so we can create workflows where the fasta is
masked before being searched with blast.
Thanx,
Russell Smithies
New Zealand
Hi Russell,
i have a working wrapper. I will upload it to the toolshed soon, but if
you like to test it before, that would be nice.
kind regards,
Bjoern
Am Montag, den 28.11.2011, 11:57 +1300 schrieb Smithies, Russell:
Has anyone created a tool for running RepeatMasker
Hi Björn,
I'd be keen to test it before release if that's OK.
I'm surprised there's not one already? I would have thought it was a key tool
in most bioinformaticians toolbox.
Thanx,
Russell Smithies
Infrastructure Team
T 03 489 9085
M 0274 734 600
E russell.smith...@agresearch.co.nz
Invermay
The blast+ wrappers have DUST capability ON by default
-Oorspronkelijk bericht-
Van: galaxy-dev-boun...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] Namens Smithies, Russell
Verzonden: maandag 28 november 2011 1:27
Aan: 'Björn Grüning'
CC:
