Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Nate Coraor
On Jan 6, 2012, at 3:49 AM, sarah Maman wrote: Dear, In your tarball (http://dist.g2.bx.psu.edu/galaxy-dist.b258de1e6cea.tar.gz), I have found the repository named galaxy-dist but I did not found galaxy-central and limp. Could you please explain me where I could find these repositories

Re: [galaxy-dev] Status on importing BAM file into Library does not update

2012-01-06 Thread Nate Coraor
On Jan 5, 2012, at 2:48 PM, Ryan Golhar wrote: On Thu, Jan 5, 2012 at 11:59 AM, Nate Coraor n...@bx.psu.edu wrote: On Jan 5, 2012, at 11:41 AM, Ryan Golhar wrote: I set it to run on the cluster: [galaxy@bic galaxy-dist]$ grep upload1 universe_wsgi.runner.ini #upload1 = local:///

Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Bassam Tork
Hi, I want to stop receiving emails to this account(bas...@gmail.com), and want to use another email for galaxy developers list. How can I replace this email account with another? Thanks, Basam. On Thu, Jan 5, 2012 at 10:52 AM, sarah Maman sma...@toulouse.inra.frwrote: Dear all, I would like

[galaxy-dev] error on viewing workflow details via API

2012-01-06 Thread Leon Mei
Hi, I received an error when I was trying to view the details of existing workflows through API. I can see 4 workflows owned by myself successfully. But viewing the details of any workflow got me a 500 error. ./display.py my_key http://galaxy.nbic.nl/galaxy/api/workflows Collection Members

Re: [galaxy-dev] Information about server availability

2012-01-06 Thread Nate Coraor
On Jan 6, 2012, at 11:25 AM, Bassam Tork wrote: Hi, I want to stop receiving emails to this account(bas...@gmail.com), and want to use another email for galaxy developers list. How can I replace this email account with another? Thanks, Basam. Hi Basam, Please use the interface at:

Re: [galaxy-dev] Status on importing BAM file into Library does not update

2012-01-06 Thread Ryan Golhar
This indicates that set_meta is running locally, in the runner process. Can you make sure there's not a typo in your config? The other possibility is that external metadata setting failed and it's being retried internally (if that was true, you'd see messages indicated such in the server

Re: [galaxy-dev] Tool shed and datatypes

2012-01-06 Thread Greg Von Kuster
Hello Jim, Thanks for sending your converter. I've committed change set 6484:4fdceec512f5 to our central repository. I now have things working for properly handling proprietary datatype converters and indexers. I've also added the following paragraph to the tool shed wiki. It doesn't apply

[galaxy-dev] Galaxy @ PAG 2012

2012-01-06 Thread Dave Clements
Hello all, Plant and Animal Genome XX (PAG2012) starts in San Diego on January 14. If you are attending PAG then you will have (at least) a half-dozen opportunities to learn more about Galaxy and how it is being used to support research. There will be workshops introducing Galaxy, and on