[galaxy-dev] New Tool deployment - Directory of output files

2012-04-08 Thread khanjan gandhi
Hi there, I am trying to configure a new tool in my instance of galaxy. The tool itself creates a bunch of output files. However, when I run this tool through the galaxy instance, it still creates a folder with all the files in its own directory ( as it does when you run the tool by itself

[galaxy-dev] Issues with local instance of toolshed?

2012-04-08 Thread Amanda Zuzolo
Hello all, I've recently been trying to implement a local instance of the tool shed, and have followed the tutorials on the wiki, but when I run sh run_community.sh, it doesn't do anything. I have mercurial installed, so that shouldn't be a problem, and I've used the example community_wsgi.ini