[galaxy-dev] Problem of global env $PATH when using galaxy in daemon mode in ubuntu

2012-08-25 Thread Christophe Antoniewski
Hi everybody, I am getting troubles when I try running our galaxy instance as a daemon service in ubuntu, using the procedure provided by James Casbon and available in the /contrib galaxy directory (briefly, installing the galaxy.debian-init in the /etc/init.d directory) Everything is OK,

Re: [galaxy-dev] Problem of global env $PATH when using galaxy in daemon mode in ubuntu

2012-08-25 Thread Langhorst, Brad
I have added information to the galaxy user's .profile export TEMP=/mnt/ngswork/galaxy/tmp export PATH=/mnt/ngswork/galaxy/sw/bin:$PATH export PYTHONPATH=/mnt/ngswork/galaxy/sw/lib/python2.6/site-packages and added a .sgerequest # set up temp and path environment variables for jobs -v

Re: [galaxy-dev] Problem of global env $PATH when using galaxy in daemon mode in ubuntu

2012-08-25 Thread Langhorst, Brad
I have added information to the galaxy user's .profile export TEMP=/mnt/ngswork/galaxy/tmp export PATH=/mnt/ngswork/galaxy/sw/bin:$PATH export PYTHONPATH=/mnt/ngswork/galaxy/sw/lib/python2.6/site-packages and added a .sgerequest # set up temp and path environment variables for jobs -v