[galaxy-dev] Server error one LefSe

2013-08-04 Thread Gil Sharon
Hi All, 
When using the Huttenhower LEfSe on the main, online, Galaxy ­ I got a
Server Error, (Server Error,An error occurred. See the error logs for more
information. (Turn debug on to display exception reports here)) when tried
to Format data for LEfSe. Was able to successfully use it yesterday, but now
it seems to be down. This happened using three different browsers and on
multiple retries.. 

Any help is appreciated.. (is there a way of getting around that step? Other
steps seem to be working fine).

Gil




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[galaxy-dev] Galaxy jobs running on cluster can't stop.

2013-08-04 Thread shenwiyn
Hi everyone,
I run my galaxy jobs of Megablast  on cluster ,but when I want to kill my 
Megablast by clicking , the job keeps on running in my background.The 
job_conf.xml I set as follows:

destination id=long_jobs runner=pbs tags=cluster 
   param 
id=Resource_Listwalltime=72:00:00,nodes=2:ppn=8,mem=16G/param 
   param 
id=galaxy_external_runjob_scriptscripts/drmaa_external_runner.py/param
param 
id=galaxy_external_killjob_scriptscripts/drmaa_external_killer.py/param
param 
id=galaxy_external_chown_scriptscripts/external_chown_script.py/param
/destination

tools 
tool id=megablast_wrapper destination=long_jobs/ 
/tools 
Could anyone give me some help please?Thank you.




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