[galaxy-dev] "from galaxy.datatypes.data import Data" import error

Hi, can anyone confirm that circular import error? Thanks, Bjoern --- ImportError Traceback (most recent call last) in () > 1 from galaxy.datatypes.data import Text, Data /home/bag/project

[galaxy-dev] Tool-shed: Migration scripts vs direct install

I was wondering if we can move dist installed tools to tool-shed version by installing them manually using the admin web interface. Do migration scripts provide any functionality that we would lose if we use admin web interface (dist_to_shed column in database and it's significance)? -- Thanks

Re: [galaxy-dev] Error resolving Emboss tool dependencies

We ran into similar issue again with the Bowtie. Unfortunately, with Bowtie the re-install didn't fix the problem as it's skipping tool-sependency re-installation. I suspect this happened after it's tool-wrapper update. Both Emboss and Bowtie were moved to tool-shed using tool-shed migration s

Re: [galaxy-dev] options from_dataset evaluation in workflow

> Dear all, > in one of my tools I'm populating a list of possible > choices from a file in the history using the from_dataset> tag. > Now using the tool as part of a workflow, the choices are > not calculated at the setup stage, but I have to enter > free-text and Galaxy seems to evaluate whethe