Hi,
Thanks for providing the indexes via rsync::
http://wiki.g2.bx.psu.edu/Admin/Data%20Integration
We've, noticed that despite soft links pointing to it, there are no .fa
files for example in hg19/seq/
However there are 2bit files.
Would you guys recommend we convert them from 2bit to fasta?
T
to fasta shouldn't cause any problems.
>
>--Dave B.
>
>
> On 9/25/12 03:20:14.000, Kevin Y wrote:
>
>> Hi,
>>
>> Thanks for providing the indexes via rsync::
>> http://wiki.g2.bx.psu.edu/**Admin/Data%20Integration<http://wiki.g2.bx.psu.edu/Admin/Data%
time to include the (approximately) four times larger
> files when 2bit is available.
>
> --Dave B.
>
>
> On 9/25/12 20:55:31.000, Kevin Y wrote:
>
>> Thanks Dave,
>> A question before we go ahead, why are they missing in the first place?
>>
>> D
Hi,
We are trying to debug our local instance of Gencode Partition (version
1.0.0)
We seem to missing this configuation file
encode_feature_partitions/partition_list.txt
The link given in the tool is behind a login wall and I can't get through:
http://genome.imim.es/gencode/wiki/index.php/Colle
Hi,
I'm looking for documentation on what I can do inside the
tag for tools.
I know of things like
#if str( $input ) == 'yes':
Do stuff
#end if
can I do for loops?
What should I google?
I can't find anything on the wiki.
Thanks,
Kevin.
___
Hi dev list,
What is the simplest xml I can put into a tool_dependencies.xml
for it to create a dummy env.sh in tool-dependency/tool/version/
/awef234243/env.sh
And will this be sourced each time. Or does the dependency need to be
some sort of "successfully install" status for it to be source
create an env.sh file that is sourced when the
>> tool(s) included in the installed repository is executed in the Galaxy
>> instance in case this is what you're looking for.
>>
>>
>> http://wiki.galaxyproject.org/ToolShedToolFeatures#Finding_dependencies_included_in_an_instal
