Re: [galaxy-dev] Velvet not working

2012-11-08 Thread Simon Gladman
Hi Philipe, Unfortunately, the velvet wrappers in the toolshed seem to be very specific to a certain compilation of velvet. You'll need to recompile Velvet locally with the same settings. I think it needs CATEGORIES=5 in the make command for velvet. Hope this helps, Simon Gladman VBC - Monash

[galaxy-dev] Testing framework and repeat, boolean and conditional parameters

2012-11-08 Thread Simon Gladman
FAILED (errors=1) My question: Can the testing framework handle the nesting of the boolean, conditional and repeat parameters or have I made a mistake in the test xml? Cheers, Simon Gladman VBC/VLSCI Monash University Australia. ___ Please keep

[galaxy-dev] nested repositories and tools

2013-06-05 Thread Simon Gladman
are in and the galaxy being installed into are the latest versions as of 05/06/2013. Please help! I’ve attached all of the relevant files below. Cheers, Simon Gladman. Victorian Bioinformatics Consortium Monash University, Australia. *Respository: velvetoptimiser_gvl -- the main repo.* *File

[galaxy-dev] Toolshed tool doesn't exist error after installation from toolshed

2013-06-10 Thread Simon Gladman
? Cheers, Simon Gladman ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy

[galaxy-dev] Migrate user data to a new server

2014-04-14 Thread Simon Gladman
Hi all, I've tried looking in the mailing list for this to no avail. (Maybe my search terms were no good..) I administer a server with about 15 users. The server is failing and so I have set up a new server (with an updated OS, Galaxy version etc (galaxy versions: old - nov 2013, new - Feb