Hi,
We ran into a problem if galaxy is running behind multiple reverse proxies.
Galaxy assumes that the X-Forwarded-Host header only contains a single host
to which it redirects, but apache will append comma-separated components to
it if it already exists, which is the case of multiple reverse
Hi,
We ran into a problem if galaxy is running behind multiple reverse proxies.
Galaxy assumes that the X-Forwarded-Host header only contains a single host
to which it redirects, but apache will append comma-separated components to
it if it already exists, which is the case of multiple reverse
Hi,
We ran into a problem if galaxy is running behind multiple reverse proxies.
Galaxy assumes that the X-Forwarded-Host header only contains a single host
to which it redirects, but apache will append comma-separated components to
it if it already exists, which is the case of multiple reverse
Hi all,
I was told that updates to packages owned by devteam should just be sent
here, since there is no public repo.
I have patches for the libxml2 and libxslt tool_dependency.xml's, that set
some more environment variables that my tool needs (specifically, the
python lxml package needs some of
your python package up
and running at that time, this would be great!
Cheers,
Bjoern
Am 24.06.2014 18:57, schrieb Jan Kanis:
Ok, here is the tool_dependencies.xml. This
https://gist.github.com/JanKanis/650c88001c03ac4320fe#
file-not_working_tool_dependencies
(also attached
Probably the same way by which it keeps track of you when you are logged
in: setting a cookie in the browser. I didn't verify this, but that is how
basically all web services do it. If you clear the galaxy cookies I expect
you will end up in a new empty workspace.
On 25 June 2014 01:18, Melissa
In a tool_dependency.xml file I want to install python package lxml in a
virtual environment, as a tool I'm building needs it. The python lxml
package requires the libxml2 tool dependency. I have added a
set_environment_for_install action that refers to the libxml2 repository,
but when python/pip
. This is from the blast2html tool.
Jan
On 24 June 2014 15:30, Dave Bouvier d...@bx.psu.edu wrote:
Jan,
In order to help track down this issue, could you provide the
tool_dependencies.xml you're using?
--Dave B.
On Tue 24 Jun 2014 05:40:30 AM EDT, Jan Kanis wrote
2014 21:55, Peter Cock p.j.a.c...@googlemail.com wrote:
On Tue, Jun 17, 2014 at 4:57 PM, Jan Kanis jan.c...@jankanis.nl wrote:
Too bad there aren't any really good options. I will use the environment
variable approach for the query size limit.
Are you using the optional job splitting
Too bad there aren't any really good options. I will use the environment
variable approach for the query size limit. For the gene bank links I guess
modifying the .loc file is the least bad way. Maybe it can be merged into
galaxy_blast, that would at least solve the interoperability problems.
answers for your depending on what options are
available to the server admin. What exactly about the tool is
configurable - can you be more specific?
-John
On Fri, Jun 13, 2014 at 10:59 AM, Jan Kanis jan.c...@jankanis.nl wrote:
I am writing a tool that should be configurable by the server
I am writing a tool that should be configurable by the server admin. I am
considering adding a configuration file, but where should such a file be
placed? Is the tool-data directory the right place? Is there another
standard way for per-tool configuration?
Jan
Hi all,
Where are the toolshed packages owned by devteam maintained? The galaxy
sources don't seem to include those tool shed packages and I was unable to
find a related repository on github or a similar place.
Jan
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