Re: [galaxy-dev] Odd (possible latency/race?) problems post-upgrade

2012-08-02 Thread Jelle Scholtalbers
Hi, I'm experiencing the same problem after I configured the web application scaling- although I have to say I still have the june 03 version from central. Has this been resolved in newer updates? Cheers, Jelle On Mon, Jul 30, 2012 at 7:03 PM, Fields, Christopher J cjfie...@illinois.edu wrote:

Re: [galaxy-dev] disk space and file formats

2011-08-19 Thread Jelle Scholtalbers
Hi Patrick, the issue you are having is partly related to the idea of Galaxy to ensure reproducible science and saving each intermediate step and output files. For example in your current workflow in Galaxy you can easily do something else with each intermediate file - feed it to a different tool

Re: [galaxy-dev] approximate line numbers shown in history items can be very imprecise

2011-08-02 Thread Jelle Scholtalbers
Hi Chaolin, Although I haven't tested this, the following changes should probably work. In the datatypes_conf.xml change on this line: datatype extension=data type=galaxy.datatypes.data:Data mimetype=application/octet-stream max_optional_metadata_filesize=1048576 / the

Re: [galaxy-dev] automatic installation of galaxy tools...

2011-07-27 Thread Jelle Scholtalbers
Hi Kostas, I recently talked with Bodo Vossen from MPI who has created this functionality and made available: https://bitbucket.org/Bodolski/galaxy-central-adding-tools He added this functionality to the Admin page of Galaxy which allows to add tools without restarting the server. Unfortunately

Re: [galaxy-dev] Upload of images - jpg/png - binary file contains inappropriate content

2011-07-27 Thread Jelle Scholtalbers
Hi Greg, I do see the concern of uploading data through the api but I don't think filtering on file types is the right solution. It seems to be an issue with allowing everyone to register. Wouldn't it be better to at least validate e-mail addresses of new users on the main instance? This would

Re: [galaxy-dev] Upload of images - jpg/png - binary file contains inappropriate content

2011-07-25 Thread Jelle Scholtalbers
', 'scf' ] On Jul 22, 2011, at 11:52 AM, Jelle Scholtalbers wrote: Hi Greg, I used that link when trying to create the support. The jpg datatype was already present in the datatypes_conf.xml ( datatype extension=jpg type=galaxy.datatypes.images:Image mimetype=image/jpeg/ ) , so I first

[galaxy-dev] Upload of images - jpg/png - binary file contains inappropriate content

2011-07-22 Thread Jelle Scholtalbers
Hi all, I would like to be able to upload images to my Galaxy instance - in particular jpg/png to data libraries. I can't however find out how to overcome the problem of inappropriate content in binary file. How to go about? When I create a sniffer class in the galaxy.datatypes.images.py that