Re: [galaxy-dev] tool_type=data_source_async

2012-01-04 Thread Matt Vincent

Does this functionality exist? If so, how do we get it working?
Sorry to bump!

On 1/3/12 8:50 AM, Matt Vincent matt.vinc...@jax.org wrote:

ost recent version of Galaxy.
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[galaxy-dev] tool_type=data_source_async

2012-01-03 Thread Matt Vincent
Hello all,

I am trying to configure an Asynchronous tool (I can get it to work 
synchronously).

My configuration looks something like this for the tool:

?xml version=1.0?
tool name=mytoolname id=myunique_tool_id_1 tool_type=data_source_async
descriptionmytool description/description
command interpreter=pythondata_source.py $output 
$__app__.config.output_size_limit/command
inputs action=http://myurl; check_values=false method=post
displayGo to MyTool $GALAXY_URL/display
/inputs
request_param_translation
request_param galaxy_name=URL_method remote_name=URL_method 
missing=post /
request_param galaxy_name=URL remote_name=URL missing= /
request_param galaxy_name=jobname remote_name=jobname 
missing=N/A /
/request_param_translation
uihints minwidth=800/
outputs
data name=output format=zip /
/outputs
options sanitize=False refresh=True/
/tool


This works fine and downloads the data, but I was expecting Galaxy to post 
another GALAXY_URL parameter for me to generate the data and than post back to 
Galaxy once done.  This is described here...

http://wiki.g2.bx.psu.edu/Admin/Internals/Data%20Sources

However, I never receive “another” GALAXY_URL as descripbed in Step 1 of the 
Asynchronous data depositing section.

I am using the most recent version of Galaxy.

Can someone please show an example?

Matt
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