Nate Coraor (n...@bx.psu.edu) wrote:
> Duddy, John wrote:
> > I'm not following you - it's been 6 months since I wrote that code ;-}
>
> I know the feeling!
>
> > IT looks to me like a DatasetPath() object is always placed in that array,
> > and with on
s
used for, so I wasn't sure what that might break.
Thanks,
--nate
> John Duddy
> Sr. Staff Software Engineer
> Illumina, Inc.
> 9885 Towne Centre Drive
> San Diego, CA 92121
> Tel: 858-736-3584
> E-mail: jdu...@illumina.com
>
>
> -Original Message-
&g
Diego, CA 92121
> Tel: 858-736-3584
> E-mail: jdu...@illumina.com
>
>
> -Original Message-
> From: Nate Coraor (n...@bx.psu.edu) [mailto:n...@bx.psu.edu]
> Sent: Wednesday, November 02, 2011 12:24 PM
> To: Duddy, John
> Cc: Chorny, Ilya; galaxy-dev@lists.bx.p
Duddy
> Sr. Staff Software Engineer
> Illumina, Inc.
> 9885 Towne Centre Drive
> San Diego, CA 92121
> Tel: 858-736-3584
> E-mail: jdu...@illumina.com<mailto:jdu...@illumina.com>
>
> From: Chorny, Ilya
> Sent: Wednesday, November 02, 2011 11:50 AM
> To: Duddy,
ld have some results by EOD.
Yeah, there is probably a problem with splitting, I was about to test
that myself.
>
> Ilya
>
>
> -Original Message-
> From: Nate Coraor (n...@bx.psu.edu) [mailto:n...@bx.psu.edu]
> Sent: Wednesday, November 02, 2011 9:15 AM
&g
some ideas about.
--nate
Nate Coraor (n...@bx.psu.edu) wrote:
> Nate Coraor (n...@bx.psu.edu) wrote:
> > Chorny, Ilya wrote:
> > > So it looks like for some reason galaxy is not picking up the information
> > > in the .e file. Not sure why. I even switched it back to wri
Nate Coraor (n...@bx.psu.edu) wrote:
> Chorny, Ilya wrote:
> > So it looks like for some reason galaxy is not picking up the information
> > in the .e file. Not sure why. I even switched it back to writing the files
> > to the pbs directory and it still did not pick up
Message-
> From: galaxy-dev-boun...@lists.bx.psu.edu
> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
> Sent: Monday, October 31, 2011 8:37 PM
> To: Nate Coraor (n...@bx.psu.edu)
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Re Acutal user
>
> Thanks,
>
> Ilya
>
> -Original Message-
> From: Nate Coraor (n...@bx.psu.edu) [mailto:n...@bx.psu.edu]
> Sent: Thursday, October 27, 2011 1:24 PM
> To: Chorny, Ilya
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: Re Acutal user code
>
> Yup, cleaning
ists.bx.psu.edu
> [mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of Chorny, Ilya
> Sent: Friday, October 21, 2011 2:24 PM
> To: Nate Coraor (n...@bx.psu.edu)
> Cc: galaxy-dev@lists.bx.psu.edu
> Subject: Re: [galaxy-dev] Re Acutal user code
>
> One more thing there are s
Chorny, Ilya wrote:
> Nate,
>
> I have been trying to figure out how to make the changes you suggested (i.e.
> write output files to the job_working_directory) and then move them over to
> files but I am having a difficult time navigating the code. If you could
> point me in the right directio
Hey Ilya,
I'm looking at it now, I'll let you know asap (should be tomorrow).
--nate
Chorny, Ilya wrote:
> Nate,
>
> I have been trying to figure out how to make the changes you suggested (i.e.
> write output files to the job_working_directory) and then move them over to
> files but I am havi
Chorny, Ilya wrote:
> Nate,
>
> We ran into this issue with /tmp not having enough space. We came up with a
> generic solution and were wondering if you might want to add it to
> galaxy-central. We did not want to modify SGE as it could affect other jobs
> that use the cluster.
>
> We create
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