Re: [galaxy-dev] Tool wrapper XSD

2013-02-20 Thread Pierre Pericard
Ok, thanks a lot. I'm not sure I will have the time to develop a XSD but after looking at yours I think it would only need a few contributors to get a fully complete and updated one. Thanks again, Pierre Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique

[galaxy-dev] Tool wrapper XSD

2013-02-19 Thread Pierre Pericard
Hi everyone, Is there a Galaxy XML tool wrapper XSD ? Thanks, Pierre -- Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS - UPMC Place Georges Teissier CS 90074 29688 ROSCOFF CEDEX FRANCE Tel : (+33) 2 98 29 56 46 http

Re: [galaxy-dev] Best way to work with one directory and many files as 1 input

2013-01-31 Thread Pierre Pericard
Hi Christos, Yes, I would be very interested by your modified file. I'm forwarding to the mailing-list so this bug can be listed. Thanks, Pierre Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS - UPMC Place Ge

Re: [galaxy-dev] Best way to work with one directory and many files as 1 input

2013-01-30 Thread Pierre Pericard
Ok, thanks a lot, I'll try and get back to the mailing list if other problems seem to occur. Pierre. Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS-UPMC Place Georges Teissier CS 90074 29688 Roscoff CEDEX FRANCE

Re: [galaxy-dev] Best way to work with one directory and many files as 1 input

2013-01-30 Thread Pierre Pericard
alaxy. There were talks about changing the way Galaxy handle zip files, is it still on the table ? Thank in advance for any help, Pierre Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS-UPMC Place Georges Teissier CS

Re: [galaxy-dev] Best way to work with one directory and many files as 1 input

2013-01-29 Thread Pierre Pericard
ed to maintain this structure in the job working directory. Pierre. Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS-UPMC Place Georges Teissier CS 90074 29688 Roscoff CEDEX FRANCE http://abims.sb-roscoff.fr/ Le 29/01/20

[galaxy-dev] Best way to work with one directory and many files as 1 input

2013-01-29 Thread Pierre Pericard
pdate on a behavior change about zip files (http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-June/005631.html) ? Thanks in advance for any input, Pierre -- Pierre Pericard IE CDD - Projet Peptisan Service Informatique et Bio-informatique (SIB) Station Biologique de Roscoff CNRS-UPMC Place

[galaxy-dev] Variable output number in workflows

2012-11-30 Thread Pierre Pericard
n care of, but we would like the workflow toolbox to present 1 or 2 outputs (ideally with all 3 names different) depending on how many files are in the input. Is there any way to do so other than making 2 different versions of the xml or displaying all 3 outputs in the workflow toolbox ? Thanks