[galaxy-dev] Bam to fastq

2011-07-06 Thread Zschunke, Aaron M. 
Hi,

Is there any way to convert a certain section of a bam file to fastq
using the galaxy tools? I just want to convert a certain part of the
genome. Thanks.

Aaron
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Re: [galaxy-dev] Bam to fastq

2011-07-06 Thread Holger Klein 
Hi Aaron,

On 07/06/2011 04:45 PM, Zschunke, Aaron M. wrote:

 Is there any way to convert a certain section of a bam file to fastq
 using the galaxy tools? I just want to convert a certain part of the
 genome. Thanks. 

there is the bam_to_fastq tool on the toolshed
(http://toolshed.g2.bx.psu.edu/) in the SAM subsection.

Regards,
Holger




-- 
Dr. Holger Klein
Core Facility Bioinformatics
Institute of Molecular Biology gGmbH (IMB)
http://www.imb-mainz.de/
Tel: +49(6131) 39 21511
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