On Tue, May 1, 2012 at 3:46 PM, Dannon Baker dannonba...@me.com wrote:
I'll take care of it. Thanks for reminding me about the TODO!
This seems to have reached galaxy-central now:
https://bitbucket.org/galaxy/galaxy-central/changeset/dc20a7b5b6ce
i.e. When Galaxy creates sub-jobs from tools
A suggested change will be coming down the pipe shortly, but it's good to
hear that it will be useful!
-Scott
- Original Message -
On Tue, May 1, 2012 at 3:46 PM, Dannon Baker dannonba...@me.com
wrote:
I'll take care of it. Thanks for reminding me about the TODO!
This seems to
On Tue, May 1, 2012 at 3:46 PM, Dannon Baker dannonba...@me.com wrote:
On Tue, May 1, 2012 at 3:10 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On May 1, 2012, at 10:03 AM, Dannon Baker dannonba...@me.com wrote:
On May 1, 2012, at 9:51 AM, Peter Cock wrote:
I'm a little confused about
On Tue, May 1, 2012 at 3:46 PM, Dannon Baker dannonba...@me.com wrote:
I'll take care of it. Thanks for reminding me about the TODO!
On a related point, I've noticed sometimes one child job from a split task
can fail, yet the rest of the child jobs continue to run on the cluster wasting
CPU
On a related point, I've noticed sometimes one child job from a split task
can fail, yet the rest of the child jobs continue to run on the cluster
wasting
CPU time. As soon as one child job dies (assuming there are no plans for
attempting a retry), I would like the parent task to kill all
On Thu, May 3, 2012 at 3:54 PM, Dannon Baker dannonba...@me.com wrote:
On a related point, I've noticed sometimes one child job from a split task
can fail, yet the rest of the child jobs continue to run on the cluster
wasting
CPU time. As soon as one child job dies (assuming there are no
Hi all,
We're running our Galaxy with an SGE cluster, using the DRMAA
support in Galaxy, and job splitting. I've noticed if the user cancels
a job (that was running or queued on the cluster) while the job is
shows as deleted in Galaxy, looking at the queue on the cluster
with qstat shows it
I'll take care of it. Thanks for reminding me about the TODO!
On May 1, 2012, at 10:03 AM, Dannon Baker dannonba...@me.com wrote:
On May 1, 2012, at 9:51 AM, Peter Cock wrote:
I'm a little confused about tasks.py vs drmaa.py but that TODO
comment looks pertinent. Is that the problem
