Colin;
Second -and still unsolved- problem: When i try to run a picard tool, I get
the following exception:
File /home/hg/Galaxy/galaxy-dist/tools/picard/picard_wrapper.py, line 40
class PicardBase():
^
SyntaxError: invalid syntax
What version of Python are you
Hi, Colin.
Sorry you are having such problems.
There's a lot of detailed documented that's just not yet written.
As you discovered, Picard tools expect the individual Picard jar files
to be in tool-data/shared/jars/
eg in one of the tools like rgPicardMarkDupes.xml you'll see
-j
