Re: [galaxy-dev] SeqPrep wrapper?

2013-10-23 Thread Lionel Guy
Hi Brad and all, To follow-up on this, I've released a SeqPrep wrapper, v0.1: http://toolshed.g2.bx.psu.edu/view/lionelguy/seqprep Any testing and report is highly appreciated! Cheers, Lionel On 10/14/2013 01:55 PM, Lionel Guy wrote: Hi Brad, (cc-ing the list) I'm more interested in the m

Re: [galaxy-dev] SeqPrep wrapper?

2013-10-14 Thread Lionel Guy
Hi Brad, (cc-ing the list) I'm more interested in the merging part, and after a quick search on the toolshed, there are no tools to merge reads. Seems that there is a need for a read merger wrapper then... Lionel On 14 Oct 2013, at 13:46 , "Langhorst, Brad" wrote: > I would also like to see

[galaxy-dev] SeqPrep wrapper?

2013-10-14 Thread Lionel Guy
Hi, I'm interested in a wrapper for SeqPrep: https://github.com/jstjohn/SeqPrep Anyone preparing one/aware of someone preparing one? Otherwise I'll put one together. From its description: "SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read.